Homologs in group_692

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02930 FBDBKF_02930 94.9 Morganella morganii S1 prpB methylisocitrate lyase
EHELCC_03400 EHELCC_03400 94.9 Morganella morganii S2 prpB methylisocitrate lyase
NLDBIP_00060 NLDBIP_00060 94.9 Morganella morganii S4 prpB methylisocitrate lyase
LHKJJB_01975 LHKJJB_01975 94.9 Morganella morganii S3 prpB methylisocitrate lyase
HKOGLL_02015 HKOGLL_02015 94.9 Morganella morganii S5 prpB methylisocitrate lyase
PMI_RS13620 PMI_RS13620 33.0 Proteus mirabilis HI4320 aceA isocitrate lyase

Distribution of the homologs in the orthogroup group_692

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_692

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q56062 1.04e-172 482 77 0 294 1 prpB 2-methylisocitrate lyase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77541 1.18e-172 482 76 0 294 1 prpB 2-methylisocitrate lyase Escherichia coli (strain K12)
Q937P0 9.51e-159 447 74 0 289 1 prpB 2-methylisocitrate lyase Cupriavidus necator
Q9KSC2 1.87e-134 385 63 2 292 3 prpB 2-methylisocitrate lyase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q8EJW1 2.99e-121 352 58 1 289 3 prpB 2-methylisocitrate lyase Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
Q9YFM7 1.1e-84 259 46 4 291 3 prpB 2-methylisocitrate lyase Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
Q9Z9T7 2.52e-77 240 44 3 274 3 mmgF 2-methylisocitrate lyase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P54528 1.41e-76 238 45 4 280 1 mmgF 2-methylisocitrate lyase Bacillus subtilis (strain 168)
Q8NSH8 1.1e-70 223 43 3 288 3 prpB1 Probable 2-methylisocitrate lyase 1 Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q8NSL2 1.14e-65 211 43 2 262 3 prpB2 Probable 2-methylisocitrate lyase 2 Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
P11435 6.53e-63 203 35 2 285 1 bcpA Carboxyvinyl-carboxyphosphonate phosphorylmutase Streptomyces hygroscopicus
Q0QLE4 2.72e-56 186 38 2 264 1 Dml 2,3-dimethylmalate lyase Eubacterium barkeri
O49290 2.61e-45 159 34 4 286 1 At1g77060 Carboxyvinyl-carboxyphosphonate phosphorylmutase, chloroplastic Arabidopsis thaliana
Q05957 2.62e-43 153 34 1 276 1 PDP Petal death protein Dianthus caryophyllus
D4GTL3 8.01e-36 134 37 2 187 1 aceA Isocitrate lyase Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2)
Q6N509 7.19e-27 109 38 8 215 3 RPA3174 Oxaloacetate decarboxylase Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009)
Q135C1 1.1e-26 108 35 5 221 3 RPD_3092 Oxaloacetate decarboxylase Rhodopseudomonas palustris (strain BisB5)
Q211P3 1.98e-26 108 45 3 146 3 RPC_3351 Oxaloacetate decarboxylase Rhodopseudomonas palustris (strain BisB18)
Q07L14 3.76e-26 107 36 8 244 3 RPE_3438 Oxaloacetate decarboxylase Rhodopseudomonas palustris (strain BisA53)
B3QAW1 4.72e-26 107 37 8 215 3 Rpal_3584 Oxaloacetate decarboxylase Rhodopseudomonas palustris (strain TIE-1)
A4YT21 1.31e-25 105 32 7 261 3 BRADO3250 Oxaloacetate decarboxylase Bradyrhizobium sp. (strain ORS 278)
Q886Y2 7.7e-25 103 29 7 275 3 PSPTO_1443 Oxaloacetate decarboxylase Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Q2IXI7 9.46e-25 103 33 9 253 3 RPB_2368 Oxaloacetate decarboxylase Rhodopseudomonas palustris (strain HaA2)
Q48LY6 1.3e-24 103 29 7 275 3 PSPPH_1328 Oxaloacetate decarboxylase Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6)
Q89JL7 1.55e-24 103 35 7 229 3 bll5266 Oxaloacetate decarboxylase Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)
B0KV77 3.38e-24 102 29 5 254 3 PputGB1_4424 Oxaloacetate decarboxylase Pseudomonas putida (strain GB-1)
A5EL79 3.79e-24 102 33 5 227 3 BBta_4901 Oxaloacetate decarboxylase Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
C3KBB4 3.98e-24 102 28 5 248 3 PFLU_3105 Oxaloacetate decarboxylase Pseudomonas fluorescens (strain SBW25)
A4VQV5 6.22e-24 101 29 5 250 3 PST_3733 Oxaloacetate decarboxylase Stutzerimonas stutzeri (strain A1501)
Q4ZX15 6.45e-24 101 28 7 275 3 Psyr_1256 Oxaloacetate decarboxylase Pseudomonas syringae pv. syringae (strain B728a)
Q88N27 2.14e-23 100 29 7 274 3 PP_1389 Oxaloacetate decarboxylase Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
A5W8J7 2.14e-23 100 29 7 274 3 Pput_4334 Oxaloacetate decarboxylase Pseudomonas putida (strain ATCC 700007 / DSM 6899 / JCM 31910 / BCRC 17059 / LMG 24140 / F1)
Q4KDX1 2.7e-23 99 29 4 258 3 PFL_2455 Oxaloacetate decarboxylase Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
B1J195 3e-23 99 29 5 254 3 PputW619_1029 Oxaloacetate decarboxylase 1 Pseudomonas putida (strain W619)
Q1I5P3 3.35e-23 99 32 3 200 3 PSEEN4356 Oxaloacetate decarboxylase Pseudomonas entomophila (strain L48)
Q3KCJ2 1.25e-22 98 31 8 232 3 Pfl01_2772 Oxaloacetate decarboxylase 2 Pseudomonas fluorescens (strain Pf0-1)
P56839 1.79e-21 95 28 9 274 1 None Phosphoenolpyruvate phosphomutase Mytilus edulis
A6VCY0 5.38e-21 93 28 7 273 3 PSPA7_5594 Oxaloacetate decarboxylase Pseudomonas aeruginosa (strain PA7)
Q3KEL1 5.67e-21 93 27 6 259 3 Pfl01_2052 Oxaloacetate decarboxylase 1 Pseudomonas fluorescens (strain Pf0-1)
B1JFP4 6.2e-21 93 29 6 219 3 PputW619_5152 Oxaloacetate decarboxylase 2 Pseudomonas putida (strain W619)
Q9HUU1 9.29e-21 92 28 7 273 1 PA4872 Oxaloacetate decarboxylase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q02FE6 9.29e-21 92 28 7 273 3 PA14_64440 Oxaloacetate decarboxylase Pseudomonas aeruginosa (strain UCBPP-PA14)
B7V1T5 9.29e-21 92 28 7 273 3 PLES_52581 Oxaloacetate decarboxylase Pseudomonas aeruginosa (strain LESB58)
C1DEN4 2.58e-20 91 29 6 252 3 Avin_20130 Oxaloacetate decarboxylase Azotobacter vinelandii (strain DJ / ATCC BAA-1303)
A4XQ41 2.73e-20 91 29 5 253 3 Pmen_0689 Oxaloacetate decarboxylase Pseudomonas mendocina (strain ymp)
Q1R0Z3 1.81e-19 89 26 6 280 3 Csal_0251 Oxaloacetate decarboxylase Chromohalobacter salexigens (strain ATCC BAA-138 / DSM 3043 / CIP 106854 / NCIMB 13768 / 1H11)
P33182 5.65e-19 88 27 9 289 1 PEPM Phosphoenolpyruvate phosphomutase Tetrahymena pyriformis
Q13Q00 6.74e-19 88 33 1 201 3 Bxeno_B0871 Oxaloacetate decarboxylase Paraburkholderia xenovorans (strain LB400)
Q0ZQ45 3.77e-18 85 32 8 222 1 frbD Phosphoenolpyruvate phosphomutase Streptomyces rubellomurinus (strain ATCC 31215)
A6VZF8 6.86e-18 85 28 7 243 3 Mmwyl1_2926 Oxaloacetate decarboxylase Marinomonas sp. (strain MWYL1)
P41554 1.39e-17 85 26 10 314 3 icl Isocitrate lyase Rhodococcus fascians
P42449 2.06e-17 85 26 10 316 1 aceA Isocitrate lyase Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / BCRC 11384 / CCUG 27702 / LMG 3730 / NBRC 12168 / NCIMB 10025 / NRRL B-2784 / 534)
Q8RQN6 3.77e-17 84 27 11 317 3 aceA Isocitrate lyase Corynebacterium efficiens (strain DSM 44549 / YS-314 / AJ 12310 / JCM 11189 / NBRC 100395)
Q84G06 6.25e-17 82 31 7 274 1 pphA Phosphonopyruvate hydrolase Variovorax sp. (strain Pal2)
O86937 1.88e-16 81 27 11 292 3 ppm Phosphoenolpyruvate phosphomutase Streptomyces viridochromogenes (strain DSM 40736 / JCM 4977 / BCRC 1201 / Tue 494)
P9WKK7 8.29e-16 80 27 9 289 1 icl Isocitrate lyase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WKK6 8.29e-16 80 27 9 289 1 icl1 Isocitrate lyase 1 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
H8EVV4 8.29e-16 80 27 9 289 1 icl1 Isocitrate lyase 1 Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
P0A5H4 8.29e-16 80 27 9 289 3 icl Isocitrate lyase 1 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P51066 1.2e-15 80 28 9 260 3 aceA Isocitrate lyase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A9G6 3.39e-15 78 27 8 260 1 aceA Isocitrate lyase Escherichia coli (strain K12)
P0A9G7 3.39e-15 78 27 8 260 3 aceA Isocitrate lyase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P29247 6.56e-15 77 30 13 293 3 bcpB Phosphoenolpyruvate phosphomutase Streptomyces hygroscopicus
Q10663 1.29e-13 74 32 8 194 1 icl-1 Bifunctional glyoxylate cycle protein Caenorhabditis elegans
Q9K9H0 2.71e-13 73 30 7 189 3 aceA Isocitrate lyase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P41555 2.87e-11 67 39 4 106 3 ICL1 Isocitrate lyase Yarrowia lipolytica (strain CLIB 122 / E 150)
Q9P8Q7 3.48e-11 67 38 5 113 1 ICL1 Isocitrate lyase Candida albicans
P20014 5.36e-11 66 37 4 106 3 ICL1 Isocitrate lyase Candida tropicalis
Q9C124 7.39e-11 65 36 4 106 3 ICL1 Isocitrate lyase Komagataella pastoris
Q4HYR2 2.36e-10 64 40 5 103 1 ICL1 Isocitrate lyase Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1)
Q6BRY4 3.12e-10 64 36 4 106 3 ICL1 Isocitrate lyase Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968)
Q12031 3.22e-10 63 28 13 248 1 ICL2 Mitochondrial 2-methylisocitrate lyase ICL2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P96074 3.29e-10 63 33 3 133 1 fom1 Fosfomycin biosynthesis bifunctional protein Fom1 Streptomyces wedmorensis
P28299 5.24e-10 63 39 5 103 2 acu-3 Isocitrate lyase Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q9HFN2 5.65e-10 63 36 4 106 3 ICL1 Isocitrate lyase Cyberlindnera jadinii
O13439 6.29e-10 63 37 6 120 3 ACU-7 Isocitrate lyase Coprinopsis cinerea
A8NR45 6.65e-10 63 37 6 120 3 ACU-7 Isocitrate lyase Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
P28297 2e-09 61 33 8 152 1 ICL Isocitrate lyase Arabidopsis thaliana
Q96WZ5 3.14e-09 61 36 5 103 3 icl1 Isocitrate lyase Talaromyces marneffei
Q43097 3.19e-09 61 44 4 87 2 ICL Isocitrate lyase Pinus taeda 8
P25248 3.49e-09 60 38 4 96 2 None Isocitrate lyase Brassica napus
P49297 3.62e-09 60 39 4 96 2 None Isocitrate lyase Solanum lycopersicum
P0CT06 3.63e-09 60 38 5 103 1 ICL1 Isocitrate lyase Pyricularia oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958)
L7HUY5 3.9e-09 60 38 5 103 2 ICL1 Isocitrate lyase Pyricularia oryzae (strain Y34)
Q6T267 4.05e-09 60 37 5 103 3 icl1 Isocitrate lyase Aspergillus fumigatus (strain ATCC MYA-4609 / CBS 101355 / FGSC A1100 / Af293)
Q86ZF1 5.18e-09 60 34 5 120 2 ICL1 Isocitrate lyase Leptosphaeria maculans
Q96TP5 7.19e-09 60 36 5 103 2 ICL1 Isocitrate lyase Coccidioides immitis (strain RS)
Q9SE26 7.69e-09 60 39 4 96 2 ICL Isocitrate lyase Dendrobium crumenatum
Q6FPK7 8.06e-09 59 34 4 106 3 ICL1 Isocitrate lyase Candida glabrata (strain ATCC 2001 / BCRC 20586 / JCM 3761 / NBRC 0622 / NRRL Y-65 / CBS 138)
P49296 1.11e-08 59 38 4 97 3 None Isocitrate lyase Cucumis sativus
Q8VJU4 1.14e-08 59 27 11 242 1 icl2 Isocitrate lyase 2 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
H8F3R6 1.14e-08 59 27 11 242 1 aceAb Isocitrate lyase 2 Mycobacterium tuberculosis (strain ATCC 35801 / TMC 107 / Erdman)
Q7TZA8 1.14e-08 59 27 11 242 3 aceA Isocitrate lyase 2 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P93110 1.32e-08 59 41 4 87 2 None Isocitrate lyase Cucurbita maxima
P46831 1.59e-08 58 30 10 200 3 aceA Isocitrate lyase Mycobacterium leprae (strain TN)
P17069 1.64e-08 58 38 4 96 2 None Isocitrate lyase Gossypium hirsutum
P28240 1.64e-08 58 34 4 106 1 ICL1 Isocitrate lyase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O94198 1.8e-08 58 34 4 106 3 ICL1 Isocitrate lyase Eremothecium gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
P28298 1.82e-08 58 36 4 97 1 acuD Isocitrate lyase Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
O07718 2.09e-08 58 27 8 227 1 aceAa Putative isocitrate lyase subunit A Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
Q6Z6M4 2.13e-08 58 42 4 87 1 ICL Isocitrate lyase Oryza sativa subsp. japonica
P45456 2.81e-08 58 38 4 96 2 ICL1 Isocitrate lyase 1 (Fragment) Glycine max
P45457 2.89e-08 58 38 4 96 2 ICL2 Isocitrate lyase 2 (Fragment) Glycine max
P15479 4.17e-08 57 38 4 96 2 None Isocitrate lyase Ricinus communis
Q8NJ72 6.05e-08 57 33 4 106 2 ICL1 Isocitrate lyase Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
G9NNY7 1.71e-07 55 35 5 109 3 mcl 2-methylisocitrate lyase, mitochondrial Hypocrea atroviridis (strain ATCC 20476 / IMI 206040)
O50078 2.23e-07 55 35 3 88 1 aceA Isocitrate lyase Hyphomicrobium methylovorum
Q6BZP5 2.84e-06 52 36 4 96 1 YALI0F31999g 2-methylisocitrate lyase, mitochondrial Yarrowia lipolytica (strain CLIB 122 / E 150)
Q9I0K4 0.000137 47 35 3 88 1 PA2634 Isocitrate lyase Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS05375
Feature type CDS
Gene prpB
Product methylisocitrate lyase
Location 1140722 - 1141606 (strand: 1)
Length 885 (nucleotides) / 294 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_692
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF13714 Phosphoenolpyruvate phosphomutase

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2513 Carbohydrate transport and metabolism (G) G 2-Methylisocitrate lyase and related enzymes, PEP mutase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03417 methylisocitrate lyase [EC:4.1.3.30] Propanoate metabolism
Metabolic pathways		 -

Protein Sequence

MALNFAGRAFRDAVKSESPLQLVGAINANHALLAKRAGYKAIYLSGGGVAAGSLGIPDLGISTLDDVLTDVRRITDVCDLPLLVDADIGFGPSAFNVVRTVKSLIKAGAAGMHIEDQVGAKRCGHRPNKEIVSKQEMVDRIKAAVDARTDENFVVMARTDALAVEGLDAAMDRAQAYIDAGADMLFPEAITELDMYRLFTKNINAPVLANITEFGQTPLFTLDELRSVNIAIALYPLTAFRAMNKAAENVYNTLRREGTQQNLLSQMQTRDELYQSIGYYDYEDKLDALFSQKK

Flanking regions ( +/- flanking 50bp)

TATAACAACCAGGTATCAAATGAGTATCAAACTAATAACAAGGTGAATATATGGCTCTTAACTTCGCAGGACGCGCATTTCGTGATGCCGTAAAGTCTGAATCCCCGTTGCAGCTGGTCGGTGCTATCAATGCCAACCATGCTTTGCTGGCTAAACGTGCGGGCTATAAAGCAATTTATCTCTCCGGCGGCGGTGTTGCCGCAGGCTCCCTGGGTATCCCGGATCTGGGTATTTCCACACTGGATGATGTGCTGACAGATGTCCGCCGTATCACCGATGTGTGTGATTTACCGCTGCTGGTGGATGCAGATATTGGTTTTGGTCCGTCAGCATTTAATGTGGTACGCACTGTGAAATCCCTGATCAAAGCCGGTGCCGCCGGTATGCATATTGAAGATCAGGTTGGCGCAAAGCGTTGTGGTCACCGCCCGAACAAAGAAATCGTCTCAAAACAGGAAATGGTTGATCGCATTAAAGCGGCAGTTGATGCACGTACAGATGAAAACTTTGTAGTAATGGCGCGGACTGATGCTCTTGCGGTGGAAGGTCTGGATGCCGCCATGGATCGTGCTCAGGCGTATATTGATGCCGGTGCTGATATGTTATTCCCCGAAGCTATCACTGAGCTGGATATGTACCGCCTGTTCACCAAAAATATCAACGCACCGGTGCTTGCCAATATTACTGAATTCGGTCAGACGCCGCTGTTTACCCTGGATGAACTGCGCAGTGTGAATATCGCTATCGCCCTGTATCCGCTTACCGCGTTCCGTGCCATGAATAAAGCGGCTGAGAATGTGTATAACACGCTGCGTCGTGAAGGCACTCAGCAAAATCTGCTGTCACAGATGCAGACCCGTGATGAATTATACCAAAGCATCGGTTACTACGATTATGAAGACAAGCTCGACGCTCTGTTTTCACAGAAAAAGTAACACCTGAATCTTACCCGATACTACGCGAAGCAGGTTGTCTGACTATACCC