COG2513


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2513, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 6 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description 2-Methylisocitrate lyase and related enzymes, PEP mutase family
Function(s) descr. Carbohydrate transport and metabolism (G)

Occurence in the database

COG2513 is associated with 6 different proteins (see tab "Protein list" and "Profile")
The 6 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_692 FBDBKF_02930 280536 281420 1 prpB methylisocitrate lyase Morganella morganii S1
1 group_692 EHELCC_03400 668356 669240 1 prpB methylisocitrate lyase Morganella morganii S2
2 group_692 NLDBIP_00060 10896 11780 -1 prpB methylisocitrate lyase Morganella morganii S4
3 group_692 LHKJJB_01975 380905 381789 1 prpB methylisocitrate lyase Morganella morganii S3
4 group_692 HKOGLL_02015 386416 387300 1 prpB methylisocitrate lyase Morganella morganii S5
5 group_692 F4V73_RS05375 1140722 1141606 1 prpB methylisocitrate lyase Morganella psychrotolerans