Homologs in group_2521

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02195 FBDBKF_02195 95.4 Morganella morganii S1 lsrR transcriptional regulator LsrR
EHELCC_02665 EHELCC_02665 95.4 Morganella morganii S2 lsrR transcriptional regulator LsrR
NLDBIP_00795 NLDBIP_00795 95.4 Morganella morganii S4 lsrR transcriptional regulator LsrR
LHKJJB_01240 LHKJJB_01240 95.4 Morganella morganii S3 lsrR transcriptional regulator LsrR
HKOGLL_01280 HKOGLL_01280 95.4 Morganella morganii S5 lsrR transcriptional regulator LsrR

Distribution of the homologs in the orthogroup group_2521

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2521

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7N2E0 6.21e-173 484 77 0 306 3 lsrR Transcriptional regulator LsrR Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A7ZLX0 3.86e-149 424 67 0 303 3 lsrR Transcriptional regulator LsrR Escherichia coli O139:H28 (strain E24377A / ETEC)
B1IRU8 5.31e-149 424 67 0 303 3 lsrR Transcriptional regulator LsrR Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A065 5.31e-149 424 67 0 303 3 lsrR Transcriptional regulator LsrR Escherichia coli O9:H4 (strain HS)
Q8XAY6 5.31e-149 424 67 0 303 3 lsrR Transcriptional regulator LsrR Escherichia coli O157:H7
B1LFA3 3.12e-148 422 67 0 303 3 lsrR Transcriptional regulator LsrR Escherichia coli (strain SMS-3-5 / SECEC)
P76141 3.48e-148 422 67 0 303 1 lsrR Transcriptional regulator LsrR Escherichia coli (strain K12)
B1XEA0 3.48e-148 422 67 0 303 3 lsrR Transcriptional regulator LsrR Escherichia coli (strain K12 / DH10B)
Q57HE3 2.46e-147 419 65 0 310 3 lsrR Transcriptional regulator LsrR Salmonella choleraesuis (strain SC-B67)
Q8Z2X4 3.06e-147 419 65 0 310 3 lsrR Transcriptional regulator LsrR Salmonella typhi
A9MZF9 3.06e-147 419 65 0 310 3 lsrR Transcriptional regulator LsrR Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q5PJE8 3.06e-147 419 65 0 310 3 lsrR Transcriptional regulator LsrR Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZKQ5 6.5e-147 419 66 0 303 1 lsrR Transcriptional regulator LsrR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A6TEB9 1.71e-145 415 67 0 309 3 lsrR Transcriptional regulator LsrR Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A4WER5 3.46e-144 412 67 0 309 3 lsrR Transcriptional regulator LsrR Enterobacter sp. (strain 638)
P37078 1.17e-29 118 30 7 315 1 sorC Sorbitol operon regulator Klebsiella pneumoniae
Q2YIQ4 3.05e-28 114 27 7 313 2 eryD Erythritol catabolism regulatory protein EryD Brucella abortus (strain 2308)
P39356 5.12e-25 105 25 7 336 3 yjhU Uncharacterized transcriptional regulator YjhU Escherichia coli (strain K12)
P39140 6.25e-25 105 25 8 321 1 deoR Deoxyribonucleoside regulator Bacillus subtilis (strain 168)
P35168 1.43e-07 55 25 8 252 3 cggR Central glycolytic genes regulator Priestia megaterium (strain DSM 319 / IMG 1521)
O32253 0.000243 45 24 6 252 1 cggR Central glycolytic genes regulator Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04565
Feature type CDS
Gene lsrR
Product transcriptional regulator LsrR
Location 965357 - 966307 (strand: 1)
Length 951 (nucleotides) / 316 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2521
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00325 Bacterial regulatory proteins, crp family
PF04198 Putative sugar-binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2390 Transcription (K) K DNA-binding transcriptional regulator LsrR, DeoR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11531 lsr operon transcriptional repressor Quorum sensing
Biofilm formation - Escherichia coli		 -

Protein Sequence

MDYDASGLSMNEEELLARIAWFYYHDGLTQGDIGDLLGLTRLKVSRLLEKGRQSGVIRVQINSRFEGCLELEDILKKRFSLKQIRILPSLNGPELHSRLGVAGAHLLMSQLTPGQLLAVGFGEAAMATLQHLSGFVSSQQIRLVTLSGGVGQYMTGIGQLDANCPVSIIPAPLRASNATVAATFRRERSVQDVLMAACAADIAVVGLGAVNQKQDATIMRSGYISSGEQLMLGRRGAVGDILGYFIGREGEMTDDVEMHRELIGITPAELKSIPTVVGVAGGEEKAEVIVAALLGGYINALVTDEQTARVMLTLLT

Flanking regions ( +/- flanking 50bp)

CGACAGTCTCTAAAAATACAAAAGCAGCCCCGGTAAGCCCCGTTTCTTCGATGGACTATGACGCCTCAGGACTGAGTATGAATGAAGAAGAGTTATTGGCCCGTATTGCCTGGTTTTATTACCATGATGGCCTCACACAGGGAGACATCGGGGATCTGCTCGGCCTGACACGACTGAAAGTGTCGCGTTTACTCGAAAAAGGACGTCAGTCCGGTGTTATCCGGGTGCAGATAAATTCCCGGTTTGAAGGATGTCTGGAACTTGAAGATATTCTGAAAAAAAGATTCTCGTTAAAACAAATTCGCATCCTGCCTTCACTGAACGGACCTGAGCTTCACAGCCGGCTCGGTGTTGCCGGTGCACATCTTCTGATGTCTCAGCTTACCCCCGGGCAATTGCTGGCGGTCGGCTTTGGTGAAGCGGCGATGGCGACATTGCAGCACCTGAGCGGGTTTGTGTCTTCACAACAGATTAGGCTGGTGACATTGTCCGGCGGGGTCGGGCAATACATGACCGGCATCGGGCAACTCGATGCTAATTGCCCGGTCAGTATTATTCCCGCGCCGTTACGGGCATCCAACGCCACGGTTGCCGCGACATTCCGCCGCGAGCGCAGTGTGCAGGATGTCCTTATGGCAGCCTGTGCGGCAGATATAGCGGTGGTCGGGCTGGGCGCGGTTAATCAGAAACAGGATGCGACCATTATGCGCTCCGGCTACATCAGCAGCGGCGAGCAACTGATGCTGGGACGGCGCGGCGCAGTCGGTGACATTCTCGGCTATTTTATCGGCCGCGAAGGTGAAATGACTGATGATGTGGAAATGCACCGCGAACTTATCGGTATCACCCCGGCGGAGCTGAAAAGCATTCCGACTGTTGTGGGTGTGGCGGGCGGAGAAGAGAAAGCTGAGGTGATAGTGGCAGCGCTGCTGGGCGGGTATATCAATGCGCTGGTCACGGATGAACAAACGGCACGGGTGATGCTGACATTATTAACCTGATGCGCTGACTGTCTGTGCTCTGTGGCTGACAGCCGCCGCTGAAAATACAC