Homologs in group_2519

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02185 FBDBKF_02185 95.5 Morganella morganii S1 lsrC autoinducer 2 ABC transporter permease LsrC
EHELCC_02655 EHELCC_02655 95.5 Morganella morganii S2 lsrC autoinducer 2 ABC transporter permease LsrC
NLDBIP_00805 NLDBIP_00805 95.5 Morganella morganii S4 lsrC autoinducer 2 ABC transporter permease LsrC
LHKJJB_01230 LHKJJB_01230 95.5 Morganella morganii S3 lsrC autoinducer 2 ABC transporter permease LsrC
HKOGLL_01270 HKOGLL_01270 95.5 Morganella morganii S5 lsrC autoinducer 2 ABC transporter permease LsrC

Distribution of the homologs in the orthogroup group_2519

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2519

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q2PBM2 1.99e-177 497 75 0 331 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus temperata
Q7N2D8 3.76e-174 489 74 0 331 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A4TQL6 1.51e-172 485 74 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis (strain Pestoides F)
Q1CN16 1.51e-172 485 74 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Nepal516)
A9R075 1.51e-172 485 74 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Angola)
Q7CG49 1.51e-172 485 74 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis
Q1C137 1.51e-172 485 74 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pestis bv. Antiqua (strain Antiqua)
Q66EZ0 4.66e-172 484 74 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3G0 4.66e-172 484 74 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B1JLQ1 4.71e-172 484 74 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A7FMJ8 1.89e-171 483 73 0 333 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q2PBL9 8.33e-165 465 76 0 313 3 lsrC Autoinducer 2 import system permease protein LsrC Photorhabdus luminescens
Q8Z2X6 1.28e-164 465 74 1 335 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhi
A1JJ54 5.03e-164 464 73 1 334 3 lsrC Autoinducer 2 import system permease protein LsrC Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
Q8ZKQ3 2.77e-163 462 74 1 335 1 lsrC Autoinducer 2 import system permease protein LsrC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q5PJE6 2.77e-163 462 74 1 335 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q57HE2 1.24e-162 460 74 1 335 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella choleraesuis (strain SC-B67)
A9MZG2 4.12e-162 459 74 1 334 3 lsrC Autoinducer 2 import system permease protein LsrC Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
P77672 1.14e-154 440 74 0 329 1 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12)
B1XEA2 1.14e-154 440 74 0 329 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain K12 / DH10B)
Q0T4L8 4.09e-154 438 74 0 329 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri serotype 5b (strain 8401)
B1IRU6 5.32e-154 438 73 0 329 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A067 5.32e-154 438 73 0 329 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O9:H4 (strain HS)
Q8XAY8 9.4e-154 437 74 0 329 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli O157:H7
Q83RD8 1.86e-152 434 73 0 329 3 lsrC Autoinducer 2 import system permease protein LsrC Shigella flexneri
B1LFA1 3.18e-152 434 73 0 328 3 lsrC Autoinducer 2 import system permease protein LsrC Escherichia coli (strain SMS-3-5 / SECEC)
A4WER3 7.26e-133 385 64 1 341 3 lsrC Autoinducer 2 import system permease protein LsrC Enterobacter sp. (strain 638)
A6TEB7 5.29e-125 365 63 1 342 3 lsrC Autoinducer 2 import system permease protein LsrC Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
B1JLQ2 9.32e-34 129 35 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Q66EZ1 9.32e-34 129 35 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype I (strain IP32953)
B2K3F9 9.72e-34 129 35 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype IB (strain PB1/+)
A7FMJ9 1.47e-33 129 35 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
A4TQL7 2.16e-33 129 34 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis (strain Pestoides F)
Q1CN17 2.16e-33 129 34 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Nepal516)
A9R076 2.16e-33 129 34 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Angola)
Q7CG48 2.16e-33 129 34 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis
Q1C136 2.16e-33 129 34 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia pestis bv. Antiqua (strain Antiqua)
A1JJ53 7.67e-33 127 33 5 274 3 lsrD Autoinducer 2 import system permease protein LsrD Yersinia enterocolitica serotype O:8 / biotype 1B (strain NCTC 13174 / 8081)
P36948 3.22e-32 125 32 1 263 3 rbsC Ribose import permease protein RbsC Bacillus subtilis (strain 168)
P55569 2.16e-31 123 33 2 258 3 NGR_a02490 Probable ABC transporter permease protein y4mJ Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Q5PJE5 7.01e-31 122 31 3 280 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi A (strain ATCC 9150 / SARB42)
Q8ZKQ2 7.3e-31 122 31 3 280 1 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
A9MZG3 7.3e-31 122 31 3 280 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
Q57HE1 7.3e-31 122 31 3 280 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella choleraesuis (strain SC-B67)
P0AE27 1.71e-30 120 32 0 256 3 araH L-arabinose transport system permease protein AraH Shigella flexneri
P0AE26 1.71e-30 120 32 0 256 2 araH L-arabinose transport system permease protein AraH Escherichia coli (strain K12)
Q8Z2X7 2.54e-30 120 30 3 280 3 lsrD Autoinducer 2 import system permease protein LsrD Salmonella typhi
Q7N2D7 3.24e-30 120 33 3 272 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
Q2PBM1 7.31e-30 119 33 5 273 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus temperata
Q2PBL8 1.17e-29 119 32 3 272 3 lsrD Autoinducer 2 import system permease protein LsrD Photorhabdus luminescens
P44736 2.74e-28 115 29 2 285 3 rbsC Ribose import permease protein RbsC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0AGI1 3.62e-28 114 30 4 307 1 rbsC Ribose import permease protein RbsC Escherichia coli (strain K12)
P0AGI2 3.62e-28 114 30 4 307 3 rbsC Ribose import permease protein RbsC Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI3 3.62e-28 114 30 4 307 3 rbsC Ribose import permease protein RbsC Escherichia coli O157:H7
P44885 5.46e-28 114 27 4 305 3 mglC Galactose/methyl galactoside import permease protein MglC Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q4J711 2.91e-27 112 31 7 315 1 xylH Xylose/arabinose import permease protein XylH Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
P0AGI7 9.71e-27 112 41 0 127 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI7 1.43e-06 53 30 3 146 3 xylH Xylose transport system permease protein XylH Shigella flexneri
P0AGI4 9.71e-27 112 41 0 127 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI4 1.43e-06 53 30 3 146 1 xylH Xylose transport system permease protein XylH Escherichia coli (strain K12)
P0AGI5 9.71e-27 112 41 0 127 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI5 1.43e-06 53 30 3 146 3 xylH Xylose transport system permease protein XylH Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGI6 9.71e-27 112 41 0 127 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P0AGI6 1.43e-06 53 30 3 146 3 xylH Xylose transport system permease protein XylH Escherichia coli O157:H7
P77315 1.3e-26 110 35 2 245 3 yphD Probable ABC transporter permease protein YphD Escherichia coli (strain K12)
Q1JUP6 6.1e-26 108 29 0 259 3 araH L-arabinose ABC transporter permease protein AraH Azospirillum brasilense
B1LFA0 1.95e-24 104 33 5 281 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain SMS-3-5 / SECEC)
P0AFS2 2.72e-24 104 33 5 281 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri
Q0T4L7 2.72e-24 104 33 5 281 3 lsrD Autoinducer 2 import system permease protein LsrD Shigella flexneri serotype 5b (strain 8401)
P0AFS1 2.72e-24 104 33 5 281 1 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12)
B1IRU5 2.72e-24 104 33 5 281 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
A8A068 2.72e-24 104 33 5 281 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O9:H4 (strain HS)
B1XEA3 2.72e-24 104 33 5 281 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli (strain K12 / DH10B)
Q8G845 3.26e-24 104 29 7 310 1 fruG Fructose import permease protein FruG Bifidobacterium longum (strain NCC 2705)
P32720 3.67e-24 103 28 4 285 1 alsC D-allose transport system permease protein AlsC Escherichia coli (strain K12)
Q8X504 4.93e-24 103 33 5 281 3 lsrD Autoinducer 2 import system permease protein LsrD Escherichia coli O157:H7
Q9F9B1 1.72e-22 99 32 4 265 1 frcC Fructose import permease protein FrcC Rhizobium meliloti
A6TEB6 3.45e-22 98 33 1 260 3 lsrD Autoinducer 2 import system permease protein LsrD Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
P37772 5.96e-20 92 30 8 283 1 yjfF Inner membrane ABC transporter permease protein YjfF Escherichia coli (strain K12)
A4WER2 1.14e-19 91 31 6 288 3 lsrD Autoinducer 2 import system permease protein LsrD Enterobacter sp. (strain 638)
Q8G846 9.66e-19 89 29 6 292 1 fruF Fructose import permease protein FruF Bifidobacterium longum (strain NCC 2705)
P45045 1.39e-18 89 28 7 339 3 xylH Xylose transport system permease protein XylH Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P39328 8.03e-17 83 33 3 289 1 ytfT Galactofuranose transporter permease protein YtfT Escherichia coli (strain K12)
P23200 2.06e-15 79 28 5 289 1 mglC Galactose/methyl galactoside import permease protein MglC Escherichia coli (strain K12)
Q56036 2.74e-15 79 28 5 289 1 mglC Galactose/methyl galactoside import permease protein MglC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q57321 8.02e-14 75 24 7 309 3 mglC Galactose/methyl galactoside import permease protein MglC Treponema pallidum (strain Nichols)
P0DX44 9.29e-09 59 28 4 211 3 CDR20291_0807 Tyrosine transport system permease protein Clostridioides difficile (strain R20291)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04555
Feature type CDS
Gene lsrC
Product autoinducer 2 ABC transporter permease LsrC
Location 962474 - 963478 (strand: -1)
Length 1005 (nucleotides) / 334 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2519
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF02653 Branched-chain amino acid transport system / permease component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1172 Carbohydrate transport and metabolism (G) G Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K10556 AI-2 transport system permease protein ABC transporters
Quorum sensing		 -

Protein Sequence

MLKYIQNNREVTALLAILCLFVLLGGMETRYFSFQTVTMIFGSAQIQMLLAIGATLVMLTRNIDVSVGSTTGLCAVIIGISLNAGLPLTVAILLTVATGLLAGLFNGILVTWFKIPAIVATLGTLGLYRGIMLLLTGGKWIEGLPAELKALSQPVFLGLSPIGWFIILLIILMTLFLSRTTAGRGFYATGDNLQGARQLGVPVDRTRIIAFSVNGMMAALAGIVFASQIGFIPNQTGNGLEMKAIAACVLGGISLLGGTGTIAGAILGAYFMTQIDSVLVLLKLPAWWNDFIAGFVLLAVLVFDGRLRVALEKNLRAQRYARFLTPSPQQETKK

Flanking regions ( +/- flanking 50bp)

GACACAAAAAGGTCCGAAACAGAAAGCGGCCCATCACAGGAGGCGGCATCATGCTGAAATATATACAAAATAACCGTGAAGTGACCGCGCTGCTCGCGATCCTCTGCCTGTTCGTATTACTGGGCGGAATGGAAACCCGCTATTTCAGTTTTCAGACTGTCACCATGATTTTCGGCAGTGCGCAAATCCAGATGCTGCTGGCGATTGGTGCCACCCTGGTGATGCTGACGCGCAATATTGATGTCTCTGTCGGCTCCACCACCGGGCTGTGTGCGGTGATTATCGGCATTTCACTGAACGCCGGGCTGCCTCTGACAGTCGCCATTCTGCTGACAGTTGCCACTGGTCTGCTCGCCGGATTATTTAACGGCATTCTGGTGACCTGGTTCAAAATACCGGCGATTGTTGCCACCCTCGGTACGCTCGGGCTGTATCGCGGCATTATGTTATTACTGACCGGCGGCAAATGGATTGAAGGTTTACCGGCAGAACTGAAAGCCCTGTCACAGCCGGTATTCCTCGGACTATCACCAATTGGCTGGTTCATTATCCTGCTGATTATTCTGATGACACTGTTTCTGTCCCGCACAACTGCCGGACGCGGCTTTTATGCCACCGGCGATAACTTACAGGGCGCGCGCCAGTTAGGTGTTCCGGTTGACAGAACACGTATTATTGCCTTTTCAGTCAATGGCATGATGGCAGCACTTGCCGGTATCGTCTTTGCCTCACAAATCGGCTTTATCCCTAATCAGACCGGCAACGGATTGGAAATGAAAGCGATCGCAGCCTGCGTTTTAGGCGGAATAAGCCTGCTGGGCGGCACAGGGACTATTGCCGGGGCGATTCTTGGCGCTTACTTTATGACTCAGATTGACAGTGTGCTGGTGCTGCTGAAATTACCGGCCTGGTGGAATGATTTTATCGCCGGTTTTGTCTTACTCGCCGTCTTAGTCTTTGATGGTCGTCTGCGTGTGGCTCTGGAAAAAAACCTCCGCGCCCAGCGTTATGCACGGTTCCTCACTCCGTCCCCGCAGCAGGAGACAAAAAAATGACTGGTATCAAGCGTTACGGCTGGGAAATTTCACTGTTGCTGCTGCTGGTG