Homologs in group_642

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_02105 FBDBKF_02105 96.1 Morganella morganii S1 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
EHELCC_02575 EHELCC_02575 96.1 Morganella morganii S2 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
NLDBIP_00885 NLDBIP_00885 96.1 Morganella morganii S4 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
LHKJJB_01150 LHKJJB_01150 96.1 Morganella morganii S3 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
HKOGLL_01190 HKOGLL_01190 96.1 Morganella morganii S5 rpiR DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains
PMI_RS05580 PMI_RS05580 77.9 Proteus mirabilis HI4320 - MurR/RpiR family transcriptional regulator

Distribution of the homologs in the orthogroup group_642

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_642

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46118 9.04e-160 448 75 0 280 3 hexR HTH-type transcriptional regulator HexR Escherichia coli (strain K12)
Q88P32 5.58e-104 307 55 0 276 1 hexR HTH-type transcriptional regulator HexR Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
O68281 2.44e-98 293 53 0 276 3 hexR HTH-type transcriptional regulator HexR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q143F8 5.98e-52 182 37 0 256 3 glk Bifunctional protein glk Paraburkholderia xenovorans (strain LB400)
Q62HW8 1.46e-51 181 37 0 256 3 glk Bifunctional protein glk Burkholderia mallei (strain ATCC 23344)
Q2SYA5 1.97e-51 181 37 0 256 3 glk Bifunctional protein glk Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CCUG 48851 / CIP 106301 / E264)
Q63RQ7 2.03e-51 181 37 0 256 3 glk Bifunctional protein glk Burkholderia pseudomallei (strain K96243)
Q3JPP0 2.34e-51 181 37 0 256 3 glk Bifunctional protein glk Burkholderia pseudomallei (strain 1710b)
Q1BYA7 2.27e-50 178 37 0 256 3 glk Bifunctional protein glk Burkholderia orbicola (strain AU 1054)
Q39IQ1 2.78e-50 178 37 0 256 3 glk Bifunctional protein glk Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)
Q8RD36 5.62e-43 151 34 2 271 4 TTE0211 Uncharacterized HTH-type transcriptional regulator TTE0211 Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
Q9WYG1 1.57e-31 121 34 4 278 4 TM_0326 Uncharacterized HTH-type transcriptional regulator TM_0326 Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
Q97MK5 1.34e-30 119 30 2 278 4 CA_C0191 Uncharacterized HTH-type transcriptional regulator CA_C0191 Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / IAM 19013 / LMG 5710 / NBRC 13948 / NRRL B-527 / VKM B-1787 / 2291 / W)
P44540 7.12e-29 114 31 5 259 4 HI_0143 Uncharacterized HTH-type transcriptional regulator HI_0143 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q45581 4.33e-28 112 29 2 272 1 ybbH Uncharacterized HTH-type transcriptional regulator YbbH Bacillus subtilis (strain 168)
P26833 2.6e-27 110 30 5 258 4 CPE0189 Uncharacterized HTH-type transcriptional regulator CPE0189 Clostridium perfringens (strain 13 / Type A)
A8ADG3 2.77e-21 94 27 2 262 3 murR HTH-type transcriptional regulator MurR Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
P0ACS7 1.13e-19 89 25 1 245 1 rpiR HTH-type transcriptional regulator RpiR Escherichia coli (strain K12)
P0ACS8 1.13e-19 89 25 1 245 3 rpiR HTH-type transcriptional regulator RpiR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q3YZB5 2.56e-18 85 25 3 262 3 murR HTH-type transcriptional regulator MurR Shigella sonnei (strain Ss046)
B7NPW3 2.29e-17 83 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O7:K1 (strain IAI39 / ExPEC)
Q83K75 3.32e-17 82 25 3 262 3 murR HTH-type transcriptional regulator MurR Shigella flexneri
C6UMS6 4.7e-17 82 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain B / REL606)
C5W7D8 4.7e-17 82 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain B / BL21-DE3)
B7N617 5.97e-17 82 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
B7LKK8 7.51e-17 82 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
A9MIE1 9.31e-17 81 24 2 262 3 murR HTH-type transcriptional regulator MurR Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
Q0T281 1.03e-16 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Shigella flexneri serotype 5b (strain 8401)
B1LMM1 1.05e-16 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain SMS-3-5 / SECEC)
Q32DC7 1.34e-16 81 25 3 262 3 murR HTH-type transcriptional regulator MurR Shigella dysenteriae serotype 1 (strain Sd197)
A8A2S4 1.62e-16 80 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O9:H4 (strain HS)
C6UQ16 1.62e-16 80 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O157:H7 (strain TW14359 / EHEC)
B5YZX2 1.62e-16 80 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8XBJ3 1.62e-16 80 25 3 262 3 murR HTH-type transcriptional regulator MurR Escherichia coli O157:H7
P77245 1.82e-16 80 26 5 263 1 murR HTH-type transcriptional regulator MurR Escherichia coli (strain K12)
B1XA98 1.82e-16 80 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain K12 / DH10B)
C4ZVV8 1.82e-16 80 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain K12 / MC4100 / BW2952)
B7LCH1 2.31e-16 80 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain 55989 / EAEC)
B1IX45 5.11e-16 79 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
B6I503 6.04e-16 79 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli (strain SE11)
B7M6T6 6.04e-16 79 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli O8 (strain IAI1)
A7ZPM7 6.04e-16 79 26 5 263 3 murR HTH-type transcriptional regulator MurR Escherichia coli O139:H28 (strain E24377A / ETEC)
B2TX16 1.35e-15 78 26 5 263 3 murR HTH-type transcriptional regulator MurR Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
P37767 2.78e-15 77 30 5 218 4 yfhH Uncharacterized HTH-type transcriptional regulator YfhH Escherichia coli (strain K12)
Q31Y52 6.21e-15 76 25 5 263 3 murR HTH-type transcriptional regulator MurR Shigella boydii serotype 4 (strain Sb227)
P46117 1.14e-14 75 25 5 216 4 None Uncharacterized HTH-type transcriptional regulator in aarA 3'region Providencia stuartii

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04470
Feature type CDS
Gene -
Product MurR/RpiR family transcriptional regulator
Location 946159 - 947007 (strand: -1)
Length 849 (nucleotides) / 282 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_642
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01380 SIS domain
PF01418 Helix-turn-helix domain, rpiR family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1737 Transcription (K) K DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K19337 RpiR family transcriptional regulator, carbohydrate utilization regulator - -

Protein Sequence

MNILDRLRNSLDYLSKSEKKVAETILGAPQIAIHSSIATLAKMSDVSEPTVNRFCRRLDTKGFPDFKLLLAQSLANGTPYVSRNVDENDSVDAYTSKIFESAMAGLDAVRSTLDMLTINRAVDCLTQARKISFFGLGASAAVAHDAMNKFFRFNIPVIYSDDIVIQRMSCINSTEGDVVVLISHTGRTKNLVEIARIARENDATVLAITSENSPLAAEASVTIILNVPEDTDIYMPMVSRLAQLTIIDVLATGFTLRRGPKFRDNLKRVKDALKDSRIDKLC

Flanking regions ( +/- flanking 50bp)

ATGATGACAGCCTGTTGTGTCACACAGATCAATATAAAAGGCAAAGTGGTATGAATATTTTAGACCGGCTGCGTAACAGTCTGGATTATCTGAGTAAATCTGAAAAAAAAGTGGCGGAAACAATCCTTGGTGCGCCGCAGATAGCCATCCATTCCAGCATTGCCACTCTTGCCAAAATGTCGGATGTCAGTGAACCGACGGTTAATCGTTTCTGCCGCCGTCTGGATACCAAAGGATTTCCGGATTTCAAACTGCTGCTGGCACAAAGCCTGGCTAACGGCACGCCCTATGTCAGCCGCAATGTCGATGAAAATGACTCTGTTGATGCCTATACCAGTAAGATATTTGAATCCGCTATGGCGGGGTTGGATGCGGTCAGAAGCACACTCGATATGCTGACCATTAACCGCGCTGTGGATTGCCTGACCCAGGCACGGAAAATTTCGTTTTTTGGGCTGGGGGCATCCGCTGCCGTTGCTCATGATGCCATGAATAAATTTTTCCGCTTTAACATCCCCGTTATTTATTCTGATGATATTGTCATACAGCGCATGAGTTGTATCAATAGTACCGAAGGCGATGTGGTCGTGCTGATTTCCCATACCGGGCGCACCAAAAACCTGGTTGAAATAGCCCGCATTGCCCGTGAAAATGATGCCACTGTGCTGGCAATCACATCAGAAAACTCGCCGCTTGCCGCAGAAGCCTCTGTAACTATCATACTGAATGTCCCGGAAGACACCGATATTTATATGCCGATGGTGTCACGCCTGGCACAACTGACCATTATTGATGTTCTCGCCACCGGGTTTACCCTGCGCCGTGGTCCGAAATTCCGCGATAACCTGAAACGTGTCAAAGATGCACTGAAAGACTCCCGCATTGACAAACTCTGTTAGTTTTTAATCATTTGTGTCGTTTTGACACATTTACTGCCGCTGACTGTAAT