Homologs in group_593

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01750 FBDBKF_01750 89.7 Morganella morganii S1 uspA Nucleotide-binding universal stress protein, UspA family
EHELCC_02220 EHELCC_02220 89.7 Morganella morganii S2 uspA Nucleotide-binding universal stress protein, UspA family
NLDBIP_01240 NLDBIP_01240 89.7 Morganella morganii S4 uspA Nucleotide-binding universal stress protein, UspA family
LHKJJB_00795 LHKJJB_00795 89.7 Morganella morganii S3 uspA Nucleotide-binding universal stress protein, UspA family
HKOGLL_00835 HKOGLL_00835 89.7 Morganella morganii S5 uspA Nucleotide-binding universal stress protein, UspA family
PMI_RS07010 PMI_RS07010 63.4 Proteus mirabilis HI4320 - universal stress protein

Distribution of the homologs in the orthogroup group_593

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_593

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P67091 6.89e-27 100 39 2 146 1 uspF Universal stress protein F Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P67092 6.89e-27 100 39 2 146 3 uspF Universal stress protein F Salmonella typhi
Q8FK07 3.16e-25 96 37 2 145 3 uspG Universal stress protein G Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P39177 1.35e-24 95 36 2 145 1 uspG Universal stress protein UP12 Escherichia coli (strain K12)
Q8XBT3 1.79e-24 94 36 2 145 3 uspG Universal stress protein G Escherichia coli O157:H7
Q83M07 2.15e-24 94 36 2 145 3 uspG Universal stress protein G Shigella flexneri
P0A4P8 3.9e-24 94 38 2 146 3 uspF Universal stress protein F Shigella flexneri
P0A4P6 3.9e-24 94 38 2 146 3 uspF Universal stress protein F Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TI19 3.9e-24 94 38 2 146 3 uspF Universal stress protein F Escherichia coli O6:K15:H31 (strain 536 / UPEC)
P0A4P7 3.9e-24 94 38 2 146 3 uspF Universal stress protein F Escherichia coli O157:H7
P37903 4.12e-24 94 38 2 146 1 uspF Universal stress protein F Escherichia coli (strain K12)
P67093 1.05e-22 90 35 2 145 3 uspG Universal stress protein G Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P67094 1.05e-22 90 35 2 145 3 uspG Universal stress protein G Salmonella typhi
P74148 1.19e-09 56 27 4 153 3 sll1388 Universal stress protein Sll1388 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q57951 1.88e-06 48 27 5 147 3 MJ0531 Universal stress protein MJ0531 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
Q50777 4.37e-06 47 25 3 148 3 MTBMA_c15380 Universal stress protein MTBMA_c15380 Methanothermobacter marburgensis (strain ATCC BAA-927 / DSM 2133 / JCM 14651 / NBRC 100331 / OCM 82 / Marburg)
Q2FXL6 6.01e-06 47 28 6 149 3 SAOUHSC_01819 Putative universal stress protein SAOUHSC_01819 Staphylococcus aureus (strain NCTC 8325 / PS 47)
Q6GFZ7 6.01e-06 47 28 6 149 3 SAR1788 Putative universal stress protein SAR1788 Staphylococcus aureus (strain MRSA252)
Q5HF64 6.01e-06 47 28 6 149 3 SACOL1759 Putative universal stress protein SACOL1759 Staphylococcus aureus (strain COL)
Q99TF3 6.01e-06 47 28 6 149 3 SAV1710 Putative universal stress protein SAV1710 Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q2FG28 6.01e-06 47 28 6 149 3 SAUSA300_1656 Putative universal stress protein SAUSA300_1656 Staphylococcus aureus (strain USA300)
Q7A0N0 6.01e-06 47 28 6 149 3 MW1653 Putative universal stress protein MW1653 Staphylococcus aureus (strain MW2)
Q6G8L7 6.01e-06 47 28 6 149 3 SAS1637 Putative universal stress protein SAS1637 Staphylococcus aureus (strain MSSA476)
Q2YTD0 6.01e-06 47 28 6 149 3 SAB1569 Putative universal stress protein SAB1569 Staphylococcus aureus (strain bovine RF122 / ET3-1)
Q7A551 6.01e-06 47 28 6 149 1 SA1532 Putative universal stress protein SA1532 Staphylococcus aureus (strain N315)
E1VBK4 6.77e-06 46 26 3 149 1 teaD TRAP-T-associated universal stress protein TeaD Halomonas elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 / NCIMB 2198 / 1H9)
P42297 7.69e-06 46 30 4 150 3 yxiE Universal stress protein YxiE Bacillus subtilis (strain 168)
P45680 1.02e-05 45 27 2 119 1 uspA2 Universal stress protein A homolog 2 Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q8CS61 1.3e-05 45 27 5 147 3 SE_1385 Putative universal stress protein SE_1385 Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q5HNJ5 1.3e-05 45 27 5 147 3 SERP1273 Putative universal stress protein SERP1273 Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q4L751 1.64e-05 45 28 6 149 3 SH1215 Putative universal stress protein SH1215 Staphylococcus haemolyticus (strain JCSC1435)
O27222 4.95e-05 43 25 4 148 3 MTH_1154 Universal stress protein MTH_1154 Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q49YE0 6.4e-05 43 26 5 147 3 SSP1056 Putative universal stress protein SSP1056 Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41)
Q7VLK1 0.000236 42 29 8 146 3 uspA Universal stress protein A homolog Haemophilus ducreyi (strain 35000HP / ATCC 700724)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04080
Feature type CDS
Gene -
Product universal stress protein
Location 864958 - 865395 (strand: 1)
Length 438 (nucleotides) / 145 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_593
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00582 Universal stress protein family

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0589 Signal transduction mechanisms (T) T Nucleotide-binding universal stress protein, UspA family

Protein Sequence

MYRMILVPIDVTEDVLTSNGLKHAVYLAKMSQAKLMLFHSVPDISKFSISYNYHYELLSSFADKAVERSKEELKVIAAKIDLPAEQVSYFVDYGTPRDKVLAKAKEIKADLIVIGSRHPSISTHLLGSTASGIVAHAPISVLVVR

Flanking regions ( +/- flanking 50bp)

TGCCATCTATACTCAAGTCAGGTACACATTAATCAATAATGAGGGATAGTATGTATAGAATGATATTAGTTCCTATTGATGTGACAGAAGATGTATTGACCAGTAACGGACTTAAACACGCGGTATATCTGGCAAAAATGTCGCAGGCAAAACTGATGTTATTTCATTCTGTGCCTGATATTTCCAAATTTTCAATAAGTTATAATTATCACTATGAACTTTTGAGCTCATTTGCGGATAAAGCCGTTGAGCGTTCAAAAGAAGAATTAAAGGTGATTGCCGCAAAAATTGATTTGCCTGCGGAGCAGGTGAGCTATTTTGTCGATTACGGCACACCACGGGATAAAGTTCTTGCGAAAGCAAAAGAAATAAAGGCGGATCTTATTGTGATAGGTTCCCGCCATCCGAGCATTTCCACCCATTTGCTTGGCTCTACCGCATCAGGAATTGTGGCACATGCGCCGATTTCGGTGTTGGTTGTGCGCTGACCGTACCCGGAATCCAAAACAGAAAGAGGTCCGCTGCGGGCCTCTTTCAA