Homologs in group_583

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01675 FBDBKF_01675 79.6 Morganella morganii S1 copD copper homeostasis membrane protein CopD
EHELCC_02145 EHELCC_02145 79.6 Morganella morganii S2 copD copper homeostasis membrane protein CopD
NLDBIP_01315 NLDBIP_01315 79.6 Morganella morganii S4 copD copper homeostasis membrane protein CopD
LHKJJB_00720 LHKJJB_00720 79.6 Morganella morganii S3 copD copper homeostasis membrane protein CopD
HKOGLL_00760 HKOGLL_00760 79.6 Morganella morganii S5 copD copper homeostasis membrane protein CopD
PMI_RS04900 PMI_RS04900 42.8 Proteus mirabilis HI4320 copD copper homeostasis membrane protein CopD

Distribution of the homologs in the orthogroup group_583

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_583

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76278 8.72e-39 140 35 7 290 1 yebZ Inner membrane protein YebZ Escherichia coli (strain K12)
Q9KWM8 2.82e-09 60 30 4 190 3 copD Copper resistance protein D Pseudomonas syringae pv. actinidiae
P12377 3.81e-07 54 27 8 273 2 copD Copper resistance protein D Pseudomonas syringae pv. tomato
Q47455 4.2e-07 53 24 8 273 3 pcoD Copper resistance protein D Escherichia coli
C0SP95 0.000328 45 26 11 247 1 ycnJ Copper transport protein YcnJ Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS04015
Feature type CDS
Gene copD
Product copper homeostasis membrane protein CopD
Location 849882 - 850781 (strand: 1)
Length 900 (nucleotides) / 299 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_583
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF05425 Copper resistance protein D

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1276 Inorganic ion transport and metabolism (P) P Putative copper export protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07245 copper resistance protein D - -

Protein Sequence

MTLTPEALLVTSRFIHFVSLMLSAGCGLFSVLPASDRVAVLLRARLHNTVHAAVVFTVLTTVLWLLLQGALMGDGWADMRDPDIILAVLSTAFGEVWRWQLVFAAILTAGLFLPSGRKQSFLFLLCAAVMLSLHAFTGHGVLHSGWIGRLHQIVQVIHLLSAAYWFGGLWPFLVCLLILLRRASLADGLPKEVTATLIRFSNWGHVAVFLVLTTGIVSTVLLLPDWPHFSGSDYQALLWLKISLVLTMMVLAVINRYIIVPKIAQSGRFRLLMINCWVEIILGTLAILMVAIFATYQPA

Flanking regions ( +/- flanking 50bp)

TGGTCATAAAACCAACGGTAACTATCAGTTTACTGTGAAATAACAGCGCAATGACTCTGACACCTGAAGCGTTGCTGGTCACCAGCCGCTTCATTCATTTTGTCTCTCTTATGTTGTCAGCCGGATGCGGTCTTTTTTCGGTACTACCGGCATCTGATCGCGTCGCCGTTCTGTTGCGTGCACGGTTACATAATACAGTGCACGCAGCGGTGGTTTTTACTGTACTGACAACCGTATTATGGCTGCTGTTACAGGGCGCACTTATGGGAGATGGCTGGGCTGATATGCGGGATCCGGATATTATCCTTGCGGTGCTTTCCACGGCATTCGGGGAGGTCTGGCGCTGGCAACTGGTGTTTGCTGCCATTCTGACAGCCGGATTATTTTTGCCGTCAGGGCGAAAACAGAGTTTTCTGTTTCTGCTGTGTGCCGCCGTGATGTTGTCACTGCATGCCTTCACAGGACACGGGGTACTCCACAGCGGCTGGATAGGGCGGCTTCATCAGATAGTACAGGTTATTCATCTGTTGAGCGCGGCATACTGGTTCGGTGGCTTGTGGCCGTTTCTGGTTTGCCTGCTGATACTTCTGCGCCGTGCTTCCCTTGCCGATGGTTTACCGAAAGAAGTGACGGCCACACTGATCCGGTTTTCAAATTGGGGGCATGTTGCGGTTTTTCTGGTGCTGACGACTGGGATTGTCAGTACGGTGTTGCTGCTGCCGGACTGGCCACATTTCAGCGGCAGTGATTATCAGGCACTGCTGTGGCTGAAAATCAGCCTGGTACTGACTATGATGGTACTGGCGGTGATTAACCGCTATATCATTGTCCCGAAAATAGCACAATCAGGGCGCTTTCGCCTGTTGATGATTAATTGCTGGGTTGAGATAATTCTCGGCACACTTGCCATTTTAATGGTGGCCATTTTTGCAACCTATCAGCCTGCGTGATAAGCGGGCTGCATACCGGCAGACAGATGAGACATAATATAATGAAAGCA