Homologs in group_583

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01675 FBDBKF_01675 44.1 Morganella morganii S1 copD copper homeostasis membrane protein CopD
EHELCC_02145 EHELCC_02145 44.1 Morganella morganii S2 copD copper homeostasis membrane protein CopD
NLDBIP_01315 NLDBIP_01315 44.1 Morganella morganii S4 copD copper homeostasis membrane protein CopD
LHKJJB_00720 LHKJJB_00720 44.1 Morganella morganii S3 copD copper homeostasis membrane protein CopD
HKOGLL_00760 HKOGLL_00760 44.1 Morganella morganii S5 copD copper homeostasis membrane protein CopD
F4V73_RS04015 F4V73_RS04015 42.8 Morganella psychrotolerans copD copper homeostasis membrane protein CopD

Distribution of the homologs in the orthogroup group_583

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_583

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76278 5.69e-47 162 35 5 294 1 yebZ Inner membrane protein YebZ Escherichia coli (strain K12)
P12377 1.17e-06 52 32 4 149 2 copD Copper resistance protein D Pseudomonas syringae pv. tomato
Q9KWM8 1.46e-06 52 28 6 175 3 copD Copper resistance protein D Pseudomonas syringae pv. actinidiae
Q47455 0.000177 46 24 7 234 3 pcoD Copper resistance protein D Escherichia coli

  • Number of RefSeq hits:

General

Source Proteus mirabilis HI4320
Locus tag PMI_RS04900
Feature type CDS
Gene copD
Product copper homeostasis membrane protein CopD
Location 1071392 - 1072291 (strand: 1)
Length 900 (nucleotides) / 299 (amino acids)

Contig

Accession NC_010554
Length 4063606 nucleotides
Topology circular
Plasmid False

Orthology

Orthogroup group_583
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF05425 Copper resistance protein D

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1276 Inorganic ion transport and metabolism (P) P Putative copper export protein

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07245 copper resistance protein D - -

Protein Sequence

MTPEDVYILCRIFHFVAVMFMFGLSCSAAILAKEKFVPLIQVRLRPALAISTITVFVSTYLWMIVQSGIMGDGWQDAWSLTIWQAVLGTSFGQIWQWQLVLSSLALIALFIHQRSIRNISLLLISTLMLVLHAFIGHSAMFTGSEAVIYKLNQSIHLISGAYWFGGLWPFVVCLQFLRNKDELADGMIKPIIATMKRFSLFGHFAVLLVIASGIVSAIMLLPGWPATTQLSSEYQSMLWLKIAFVALMLGLALVNRYVLVPHIRKKNNFQWLLINSWFELLLGTMVILTVAIFAINSPV

Flanking regions ( +/- flanking 50bp)

TCTGTCGATGGGCACAAAACAAAAGGTTCTTATCAATTTAGTGTAAAATAATGACTCCTGAAGACGTTTATATTTTATGCCGAATTTTTCATTTTGTGGCAGTCATGTTCATGTTCGGACTGAGCTGTTCGGCTGCCATTCTCGCTAAAGAAAAGTTTGTTCCTCTTATTCAAGTACGCTTACGCCCAGCATTGGCGATTAGCACTATCACTGTATTTGTTTCCACTTATTTATGGATGATAGTGCAATCAGGCATTATGGGAGATGGCTGGCAAGATGCTTGGTCGCTAACGATATGGCAAGCTGTATTGGGAACCTCTTTTGGCCAAATTTGGCAATGGCAATTAGTTTTATCCTCTCTCGCATTAATCGCTCTCTTTATTCATCAACGTAGCATTAGAAATATTAGTCTGTTACTTATCTCAACATTGATGCTTGTGCTGCATGCTTTTATTGGCCATAGTGCCATGTTTACAGGTAGTGAAGCCGTAATTTATAAACTAAATCAGAGTATCCATCTTATTAGTGGAGCGTATTGGTTTGGTGGTTTATGGCCTTTTGTTGTGTGCTTACAGTTTTTGCGTAATAAAGATGAATTAGCTGATGGCATGATCAAGCCTATTATTGCCACCATGAAACGCTTTTCATTATTCGGTCACTTCGCTGTTTTATTGGTTATAGCTAGTGGGATTGTGAGTGCCATTATGTTACTCCCCGGTTGGCCTGCAACGACACAACTTTCCTCAGAGTACCAAAGTATGTTATGGCTAAAAATAGCCTTTGTTGCCTTGATGTTAGGATTGGCATTAGTGAATAGGTATGTATTAGTGCCTCATATCCGTAAGAAGAATAACTTTCAATGGTTGCTTATTAATAGTTGGTTTGAGTTATTACTTGGTACTATGGTTATTTTGACAGTGGCCATTTTTGCGATTAACTCACCTGTATAGATTGATATATACTTGTATTAATCTATTTTTTTAAGTGGAAGATAACCATG