COG1276


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1276, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Putative copper export protein
Function(s) descr. Inorganic ion transport and metabolism (P)

Occurence in the database

COG1276 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_583 FBDBKF_01675 26467 27366 1 copD copper homeostasis membrane protein CopD Morganella morganii S1
1 group_583 EHELCC_02145 414287 415186 1 copD copper homeostasis membrane protein CopD Morganella morganii S2
2 group_583 NLDBIP_01315 264950 265849 -1 copD copper homeostasis membrane protein CopD Morganella morganii S4
3 group_583 LHKJJB_00720 126836 127735 1 copD copper homeostasis membrane protein CopD Morganella morganii S3
4 group_583 HKOGLL_00760 132347 133246 1 copD copper homeostasis membrane protein CopD Morganella morganii S5
5 group_583 F4V73_RS04015 849882 850781 1 copD copper homeostasis membrane protein CopD Morganella psychrotolerans
6 group_583 PMI_RS04900 1071392 1072291 1 copD copper homeostasis membrane protein CopD Proteus mirabilis HI4320