Homologs in group_1000

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05590 FBDBKF_05590 95.3 Morganella morganii S1 ycjX DUF463 domain-containing protein
EHELCC_12000 EHELCC_12000 95.3 Morganella morganii S2 ycjX DUF463 domain-containing protein
NLDBIP_12340 NLDBIP_12340 95.3 Morganella morganii S4 ycjX DUF463 domain-containing protein
LHKJJB_12200 LHKJJB_12200 95.3 Morganella morganii S3 ycjX DUF463 domain-containing protein
HKOGLL_10815 HKOGLL_10815 95.3 Morganella morganii S5 ycjX DUF463 domain-containing protein
PMI_RS06625 PMI_RS06625 69.6 Proteus mirabilis HI4320 - YcjX family protein

Distribution of the homologs in the orthogroup group_1000

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1000

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76046 0.0 718 73 0 464 1 ycjX Ras-like GTPase YcjX Escherichia coli (strain K12)
P44280 7.59e-174 499 52 3 468 3 HI_1637 Ras-like GTPase HI_1637 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8EG04 6.13e-130 387 43 6 480 1 ycjX Ras-like GTPase YcjX Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03715
Feature type CDS
Gene -
Product YcjX family protein
Location 787045 - 788442 (strand: 1)
Length 1398 (nucleotides) / 465 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1000
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF04317 YcjX-like family, DUF463

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3106 Signal transduction mechanisms (T) T Ras-like GTP-binding stress-induced protein YcjX, DUF463 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06918 uncharacterized protein - -

Protein Sequence

MKRLQNELNALVNRGLDRHLRLAVTGLSRSGKTAFITSFVNQLLNVQSGARLPLFSAARDGRIHGVKRIPQRDLGVPRFAYDEGLASLYGSPPDWPVPTRGVSEIRLKLRYRTQDSLLRHFKETSTLYLEIVDYPGEWLLDLPMLEQDYLTWSAQMQTLLKGERGQWAEPWLALCRQLDPYAPADEQALAAIAQAYTDYLHRCKAAGFHFIQPGRFVLPGDMAGAPGLQFFPFITDQMPDQTRLNKAAKNSVLGMLRDRYQYYCDHVVKGFYKHYFQHFDRQIVLVDCLTPLNSGPQAFNDMRLALTQLMQSFHYGKRTLLRRLFSPCIDKLLFAASKADHITADQHANLVALLQQLTQSAWQQAAFEGIKMDCIGLASVQATENGMVMHQGEKIPALKGMRLADNTPLTFYPGEVPKRLPDAQFWQQQGFQFESFRPLPMRMDTPLPHIRMDSAMEFLLGDKLS

Flanking regions ( +/- flanking 50bp)

ACTGCGCGCCGGAATGGAAAAACTGATCCGTCATTTGCCGTGGGAGAAACATGAAACGACTGCAAAATGAACTGAACGCCCTGGTAAACCGGGGGCTGGATCGCCATCTGCGTCTGGCGGTTACCGGGCTGAGCCGCAGCGGAAAAACCGCGTTTATTACCTCGTTTGTTAATCAGTTACTCAATGTTCAGAGCGGTGCGCGGCTGCCGCTGTTTTCTGCCGCCCGTGACGGACGTATTCACGGCGTGAAGCGGATACCACAACGGGATTTGGGTGTGCCGCGTTTTGCCTATGATGAAGGGCTGGCATCACTGTATGGTTCTCCGCCGGACTGGCCGGTGCCGACGCGTGGTGTCAGCGAAATCCGCCTGAAACTGCGCTACCGCACGCAAGACAGCCTGCTGCGCCATTTTAAAGAAACCTCTACGCTCTATCTGGAGATAGTGGATTACCCGGGTGAATGGTTGCTGGATTTACCTATGCTGGAGCAGGATTATCTGACCTGGTCTGCACAGATGCAAACGCTGCTCAAAGGGGAACGGGGACAGTGGGCAGAACCCTGGCTGGCGCTGTGCCGTCAGTTGGACCCATATGCACCGGCAGATGAACAGGCGCTTGCCGCGATAGCGCAGGCGTATACGGATTATCTGCACCGCTGCAAAGCGGCAGGGTTCCATTTTATCCAGCCCGGTCGCTTTGTGCTGCCCGGAGATATGGCGGGAGCCCCGGGTTTACAGTTTTTTCCGTTTATCACCGATCAGATGCCGGATCAGACCCGGCTGAATAAAGCGGCGAAAAACAGCGTGCTCGGCATGCTGCGTGATCGCTACCAGTACTATTGTGACCATGTGGTCAAAGGATTTTATAAGCACTATTTTCAGCATTTTGACCGCCAGATAGTGCTGGTGGATTGCCTGACCCCGCTGAACAGCGGGCCGCAGGCGTTTAATGATATGCGCCTTGCGCTGACACAACTGATGCAGAGCTTTCATTATGGCAAGCGCACGTTGTTGCGCCGCCTGTTTTCGCCCTGTATCGACAAACTGCTGTTTGCAGCAAGTAAAGCCGACCATATCACGGCAGATCAGCATGCCAATCTGGTTGCCCTGCTACAGCAACTGACGCAATCGGCATGGCAGCAGGCAGCATTTGAAGGGATCAAAATGGATTGTATCGGGCTGGCGTCTGTGCAGGCGACAGAAAACGGTATGGTAATGCATCAGGGGGAAAAAATACCTGCCCTGAAAGGCATGCGCCTGGCGGATAACACACCGCTGACATTCTATCCCGGTGAAGTGCCCAAACGCCTGCCGGATGCACAGTTCTGGCAGCAGCAGGGATTTCAGTTTGAATCGTTCCGCCCGCTGCCGATGCGGATGGACACACCATTGCCGCATATCCGTATGGACAGTGCGATGGAATTTTTACTGGGAGATAAATTGTCATGAATGAGCCGGTAAAATCACGGATAGACTTTGACGAAACGCCGTTGTCACCT