Homologs in group_1036

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_05840 FBDBKF_05840 88.4 Morganella morganii S1 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
EHELCC_11750 EHELCC_11750 88.4 Morganella morganii S2 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
NLDBIP_12090 NLDBIP_12090 88.4 Morganella morganii S4 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
LHKJJB_11950 LHKJJB_11950 88.4 Morganella morganii S3 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
HKOGLL_10565 HKOGLL_10565 88.4 Morganella morganii S5 glcD FAD/FMN-containing lactate dehydrogenase/glycolate oxidase
PMI_RS06865 PMI_RS06865 70.3 Proteus mirabilis HI4320 - FAD-binding and (Fe-S)-binding domain-containing protein

Distribution of the homologs in the orthogroup group_1036

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1036

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P77748 0.0 1552 70 2 1021 1 ydiJ D-2-hydroxyglutarate dehydrogenase Escherichia coli (strain K12)
A0A0H3KZS3 0.0 1532 69 2 1021 1 ydiJ D-2-hydroxyglutarate dehydrogenase Pantoea ananatis (strain AJ13355)
Q57252 0.0 1292 60 5 1030 1 HI_1163 D-2-hydroxyglutarate dehydrogenase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q88EH0 0.0 978 49 12 1018 2 ydiJ D-2-hydroxyglutarate dehydrogenase Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440)
P94535 2.53e-37 150 25 11 498 3 glcD Glycolate oxidase subunit GlcD Bacillus subtilis (strain 168)
Q94AX4 1.1e-31 135 28 20 532 1 DLD D-lactate dehydrogenase [cytochrome], mitochondrial Arabidopsis thaliana
Q86WU2 2.33e-26 118 25 16 505 1 LDHD Probable D-lactate dehydrogenase, mitochondrial Homo sapiens
H6LBS1 1.54e-25 115 24 17 517 1 lctD Lactate dehydrogenase (NAD(+),ferredoxin) subunit LctD Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655 / WB1)
A4VGK4 3.1e-24 110 24 18 529 1 d2hgdh D-2-hydroxyglutarate dehydrogenase Stutzerimonas stutzeri (strain A1501)
P0AEP9 3.21e-23 108 24 14 499 1 glcD Glycolate oxidase subunit GlcD Escherichia coli (strain K12)
P0AEQ0 3.21e-23 108 24 14 499 3 glcD Glycolate oxidase subunit GlcD Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
F1QXM5 6.37e-23 107 25 19 522 2 ldhd Probable D-lactate dehydrogenase, mitochondrial Danio rerio
Q7TNG8 2.22e-22 105 25 16 503 1 Ldhd Probable D-lactate dehydrogenase, mitochondrial Mus musculus
D4MUV9 6.43e-22 103 24 18 508 1 CL2_23160 D-lactate dehydrogenase Anaerostipes hadrus
Q7XI14 1.02e-19 97 25 20 510 3 D2HGDH Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial Oryza sativa subsp. japonica
B8B7X6 1.64e-19 97 25 22 514 3 D2HGDH Probable D-2-hydroxyglutarate dehydrogenase, mitochondrial Oryza sativa subsp. indica
Q8N465 2.54e-19 96 24 17 508 1 D2HGDH D-2-hydroxyglutarate dehydrogenase, mitochondrial Homo sapiens
P32891 5.05e-19 95 22 11 495 1 DLD1 D-lactate dehydrogenase [cytochrome] 1, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O29853 1.72e-18 93 25 17 452 1 dld D-lactate dehydrogenase Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
P0DV35 1.78e-18 93 22 17 506 1 XVT_549 D-2-hydroxyglutarate dehydrogenase Xanthomonas citri pv. viticola (strain LMG 965 / NCPPB 2475 / ICMP 3867 / CFBP 7660)
Q8CIM3 7.37e-18 92 23 15 507 1 D2hgdh D-2-hydroxyglutarate dehydrogenase, mitochondrial Mus musculus
Q1JPD3 7.8e-18 92 24 15 504 2 D2HGDH D-2-hydroxyglutarate dehydrogenase, mitochondrial Bos taurus
Q12627 7.88e-18 92 22 12 499 3 DLD1 D-lactate dehydrogenase [cytochrome], mitochondrial Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
P84850 3.58e-17 89 22 12 491 1 D2hgdh D-2-hydroxyglutarate dehydrogenase, mitochondrial Rattus norvegicus
P46681 1.21e-16 88 23 19 511 1 DLD2 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P39976 5.1e-16 85 23 20 523 1 DLD3 D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3 Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
O23240 1.06e-15 85 23 21 513 1 D2HGDH D-2-hydroxyglutarate dehydrogenase, mitochondrial Arabidopsis thaliana
A1L258 3.94e-15 83 22 14 490 2 d2hgdh D-2-hydroxyglutarate dehydrogenase, mitochondrial Danio rerio
Q9V778 6.32e-15 83 24 11 374 2 Agps Alkylglycerone-phosphate synthase Drosophila melanogaster
P9WIT1 4.89e-14 79 25 21 505 1 Rv2280 Uncharacterized FAD-linked oxidoreductase Rv2280 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WIT0 4.89e-14 79 25 21 505 3 MT2338 Uncharacterized FAD-linked oxidoreductase MT2338 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
O00116 5.35e-13 77 24 14 369 1 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal Homo sapiens
Q8C0I1 5.72e-13 76 23 10 369 1 Agps Alkyldihydroxyacetonephosphate synthase, peroxisomal Mus musculus
P97275 2.01e-12 75 24 12 369 1 AGPS Alkyldihydroxyacetonephosphate synthase, peroxisomal Cavia porcellus
Q9EQR2 5.03e-12 73 23 10 369 1 Agps Alkyldihydroxyacetonephosphate synthase, peroxisomal Rattus norvegicus
O45218 6.9e-09 63 22 10 360 2 ads-1 Alkyldihydroxyacetonephosphate synthase Caenorhabditis elegans
P56216 2.93e-08 61 34 4 149 1 VAOA Vanillyl-alcohol oxidase Penicillium simplicissimum
O97157 1.53e-07 59 25 6 252 3 None Alkyldihydroxyacetonephosphate synthase Trypanosoma brucei brucei
P43801 1.11e-06 55 21 13 368 3 glpC Anaerobic glycerol-3-phosphate dehydrogenase subunit C Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8X7S0 1.19e-06 56 29 4 156 3 ygcU Uncharacterized FAD-linked oxidoreductase YgcU Escherichia coli O157:H7
Q46911 1.27e-06 55 29 4 156 3 ygcU Uncharacterized FAD-linked oxidoreductase YgcU Escherichia coli (strain K12)
A0R607 5.1e-06 53 31 6 164 1 dprE1 Decaprenylphosphoryl-beta-D-ribose oxidase Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P58710 3.63e-05 51 25 7 187 1 Gulo L-gulonolactone oxidase Mus musculus
P9WJF1 5.84e-05 50 28 4 157 1 dprE1 Decaprenylphosphoryl-beta-D-ribose oxidase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WJF0 5.84e-05 50 28 4 157 3 dprE1 Decaprenylphosphoryl-beta-D-ribose oxidase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q3ZC33 6.09e-05 50 27 4 144 2 GULO L-gulonolactone oxidase Bos taurus
O47881 0.000117 49 26 4 126 1 None L-galactono-1,4-lactone dehydrogenase, mitochondrial Brassica oleracea
Q9C1X2 0.000174 49 20 16 516 3 SPBC713.03 Putative D-lactate dehydrogenase C713.03, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q796P5 0.000282 48 24 4 119 3 yitY Uncharacterized FAD-linked oxidoreductase YitY Bacillus subtilis (strain 168)
Q90YK3 0.000307 48 23 6 190 2 GULO L-gulonolactone oxidase Scyliorhinus torazame
O96759 0.000356 48 26 3 143 1 eapA Alkyldihydroxyacetonephosphate synthase Dictyostelium discoideum
Q9SU56 0.000468 47 27 3 110 1 GLDH L-galactono-1,4-lactone dehydrogenase, mitochondrial Arabidopsis thaliana
O17397 0.001 46 31 1 100 3 F52H2.6 Diminuto-like protein Caenorhabditis elegans

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03485
Feature type CDS
Gene -
Product FAD-binding and (Fe-S)-binding domain-containing protein
Location 744045 - 747113 (strand: 1)
Length 3069 (nucleotides) / 1022 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1036
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01565 FAD binding domain
PF02913 FAD linked oxidases, C-terminal domain
PF13183 4Fe-4S dicluster domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0277 Energy production and conversion (C) C FAD/FMN-containing lactate dehydrogenase/glycolate oxidase

Protein Sequence

MIPRLTQSPQVSPETGRYIIALNESGFTGDTTTRYGERLTLATDNSIYQLLPQAIVFPRSVADVILIMRIASQDEFRSVQFTPRGGGTGTNGQSLNSGVVIDLSRYMNRILEINPEQGWVRVEAGVIKDQLNAYLKPYGYFFAPELSTSNRATLGGMINTDASGQGSLVYGKTSNHVLGLRSVLINGELLDTQPVPVSVARAYAEEDSVTGQLYRTTLNSCEANRQLILDSFPKLNRFLTGYDLRHVFSDDLQTFDLTRILTGSEGTLAVITQAKLNITPLPAVRRLVNVKYDAFDSALRNAPFMVAAQALSVETVDSKVLNLAREDIVWHSVSELVTDVADKTLLGLNIVEFCGDDQALIDGQVTSLCARLDGLMANNEAGVIGYQVCQDLTGIERIYAMRKKAVGLLGNSKGAAKPIPFAEDTCVPPEHLADYITEFRALLDSHHLEYGMFGHVDAGVLHVRPALDMCSPEQEVLMKQISDEIVGLTAKYGGLLWGEHGRGFRAQYGEAFFGDTLYRELRRIKGAFDPENRLNPGKICTPSDSDAPLVQVDAVKRGTYDRTIPIDVRNAFAGAINCNGNGLCFNFDVKSPMCPSMKVTQSRFHSPKGRAALVREWLRLLAEQGTDPALLTESVPRTRLSLRGMIEKTRHTWRAARGEYDFSHEVKESMSGCLACKACSTQCPVKIDVPEFRARFLALYHGRYLRPLRDHLVANVESGAPLMAKAPRVFNFFLKQAWVQTLSEKTVGMTDLPLLSAPSLKQQLAGSKATSVTLEMLEGMSESERQAGRYLFIVQDPFTSYFDAKVVADFAALAEKLGFHPVLLPFSPNGKAQHIKGFLARFARTATRTADFLNRVARLGCPMVGVDPALVLCYRDEYKTVLPPEKQLFRVMLVHEWLTEYAEQLPETAATTDTRPWYLFSHCTESTALPDSVNVWKAIFSRFGASLQPVSVGCCGMAGTYGHEMPNLERSKGIYQLSWAQPYQTLVSERCLTTGYSCRSQVKRMEGKVMLHPLQALLTLVP

Flanking regions ( +/- flanking 50bp)

TATACTGTCGAATTCGCAATGTGACCATTTATGATAAAGAGCCGCAGATAATGATCCCACGATTAACGCAATCTCCTCAGGTAAGCCCGGAAACCGGACGGTATATTATCGCCCTGAACGAAAGCGGATTTACCGGTGATACCACAACCCGTTATGGTGAGCGCCTGACGCTTGCCACGGACAACAGTATTTATCAGCTTCTGCCGCAGGCGATTGTGTTTCCGCGCTCGGTGGCGGATGTGATTTTAATCATGCGTATTGCATCGCAGGATGAATTCCGCTCTGTTCAGTTTACCCCGCGCGGCGGCGGAACCGGCACCAATGGTCAGTCGCTGAACAGCGGTGTGGTGATTGATTTATCCCGTTATATGAACCGTATCCTTGAAATTAACCCGGAACAGGGTTGGGTGCGGGTTGAAGCCGGGGTGATTAAAGATCAGCTGAATGCGTATCTGAAGCCGTACGGTTACTTTTTTGCCCCGGAACTTTCCACATCAAACCGCGCCACACTGGGCGGCATGATTAATACGGATGCGTCCGGGCAGGGCTCGCTGGTGTACGGGAAAACGTCCAATCATGTGCTGGGCCTGCGTTCGGTACTGATCAACGGCGAATTGCTGGATACGCAACCTGTCCCGGTCAGTGTGGCGCGGGCATATGCAGAAGAGGACAGTGTGACCGGACAGTTGTACCGCACCACACTGAACAGTTGCGAAGCAAACCGGCAGTTAATCCTGGACAGCTTCCCGAAACTGAACCGTTTTCTTACCGGGTATGATCTGCGCCATGTCTTCAGTGATGATTTACAGACATTTGATTTAACCCGCATTCTGACAGGCTCTGAAGGAACGCTGGCGGTCATAACTCAGGCAAAACTGAATATCACGCCATTGCCGGCAGTACGCCGTCTGGTGAATGTCAAATATGATGCCTTTGATTCCGCTCTGCGCAATGCCCCGTTTATGGTGGCAGCGCAGGCGCTTTCTGTGGAAACCGTGGACTCAAAAGTACTGAACCTGGCGCGGGAAGATATTGTCTGGCATTCCGTCAGTGAATTAGTCACGGATGTTGCGGATAAAACCCTGCTCGGGCTGAATATTGTTGAATTTTGCGGCGATGACCAGGCGCTTATTGACGGGCAGGTTACCTCCCTTTGTGCGCGCCTTGACGGATTGATGGCAAATAATGAAGCCGGGGTAATCGGCTATCAGGTCTGTCAGGATCTGACCGGCATTGAGCGTATTTATGCAATGCGTAAAAAAGCGGTGGGATTACTGGGTAACAGTAAAGGGGCGGCAAAGCCGATCCCGTTTGCGGAAGATACCTGTGTGCCGCCGGAGCATCTTGCTGACTATATTACCGAATTCCGCGCCTTGCTCGACAGCCATCATCTGGAATACGGCATGTTCGGGCATGTGGATGCAGGCGTGTTGCACGTCCGCCCGGCACTGGATATGTGCTCGCCGGAGCAGGAAGTGCTGATGAAACAGATTTCCGATGAGATTGTGGGGCTGACGGCAAAATATGGCGGATTGCTGTGGGGTGAGCACGGCAGGGGATTTCGTGCGCAATATGGTGAGGCGTTTTTCGGCGACACACTTTATCGCGAGCTGCGCCGGATAAAAGGCGCGTTTGACCCGGAAAACCGGCTCAATCCCGGCAAAATTTGTACGCCATCAGACAGTGATGCACCGTTGGTGCAGGTGGATGCGGTAAAACGCGGCACCTATGACAGAACTATACCAATAGATGTACGAAATGCATTTGCCGGGGCAATAAATTGCAACGGCAACGGATTATGTTTTAATTTTGATGTGAAAAGCCCGATGTGTCCGTCCATGAAAGTGACGCAATCCCGCTTTCATTCCCCGAAAGGGCGCGCCGCACTGGTAAGAGAGTGGCTGCGTCTGCTGGCAGAGCAGGGAACCGACCCGGCGCTGTTAACGGAATCTGTTCCGCGCACCCGGCTCTCTCTGCGCGGGATGATTGAGAAAACCCGGCATACATGGCGCGCGGCGCGGGGAGAATATGATTTCTCCCATGAAGTGAAAGAGTCCATGTCCGGCTGTCTGGCGTGTAAAGCCTGTTCAACTCAATGCCCGGTAAAAATAGATGTGCCGGAATTCCGCGCCCGTTTCCTGGCGCTGTATCACGGGCGCTATCTGCGCCCGCTGCGTGACCATCTGGTTGCCAATGTGGAAAGCGGTGCGCCGCTGATGGCGAAAGCACCCCGCGTATTTAATTTTTTCCTGAAACAAGCCTGGGTGCAGACGCTCAGTGAAAAAACAGTCGGCATGACAGACCTGCCGCTGCTGTCTGCGCCGTCACTGAAGCAGCAGCTTGCGGGCAGCAAAGCTACATCCGTCACTCTCGAAATGCTGGAAGGCATGAGTGAAAGTGAACGGCAGGCGGGGCGTTATCTCTTTATTGTACAAGACCCTTTCACCAGTTATTTTGATGCCAAAGTGGTGGCTGACTTTGCCGCACTGGCGGAGAAACTCGGCTTTCATCCGGTACTGCTGCCGTTCAGCCCGAACGGCAAAGCGCAGCATATTAAAGGATTTCTCGCCCGTTTTGCCCGTACCGCAACCCGGACGGCTGATTTTCTCAATCGTGTGGCGCGTCTCGGCTGCCCGATGGTGGGCGTTGATCCTGCGCTGGTGCTGTGTTACCGCGATGAATATAAAACGGTGTTACCGCCGGAGAAACAGTTATTCCGCGTGATGCTGGTGCATGAATGGCTGACTGAATATGCAGAGCAGCTTCCTGAAACAGCAGCAACAACAGATACCCGTCCCTGGTATTTATTCAGTCACTGTACTGAATCGACAGCATTGCCGGACAGTGTCAACGTCTGGAAGGCGATTTTCAGCCGTTTCGGCGCGTCACTGCAACCGGTCAGTGTTGGCTGTTGCGGTATGGCGGGAACGTACGGACATGAAATGCCGAACCTGGAACGTTCAAAAGGGATTTATCAGCTCTCCTGGGCGCAGCCATATCAGACACTGGTATCAGAGCGCTGCCTGACCACCGGGTACTCCTGCCGCAGTCAGGTAAAGCGGATGGAAGGAAAAGTGATGCTGCATCCGTTGCAGGCGCTGCTGACACTGGTGCCCTGAAACTGGTATCCTGAAACCGGACAAACACGATAACCGGGAGAGTTTTATGA