Homologs in group_1818

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_13470 FBDBKF_13470 92.7 Morganella morganii S1 yniB YniB family protein
EHELCC_08625 EHELCC_08625 92.7 Morganella morganii S2 yniB YniB family protein
NLDBIP_08950 NLDBIP_08950 92.7 Morganella morganii S4 yniB YniB family protein
LHKJJB_05315 LHKJJB_05315 92.7 Morganella morganii S3 yniB YniB family protein
HKOGLL_05600 HKOGLL_05600 92.7 Morganella morganii S5 yniB YniB family protein
PMI_RS04965 PMI_RS04965 50.8 Proteus mirabilis HI4320 - YniB family protein

Distribution of the homologs in the orthogroup group_1818

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1818

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q56956 7.16e-65 200 54 1 179 4 yfeE Putative YfeABCD regulator YfeE Yersinia pestis
P76208 1.01e-56 179 54 2 165 4 yniB Uncharacterized protein YniB Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS03295
Feature type CDS
Gene -
Product YniB family protein
Location 702963 - 703502 (strand: 1)
Length 540 (nucleotides) / 179 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1818
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF14002 YniB-like protein

Protein Sequence

MTLQQARWLAVFKRVAGWVVFIPALISTIVSLLKLAHQQSTASDKINAVIGDFINVVTEMIRVNTPFLNVFWRNSPTPDKLLGTESYNLSFLLIYILMFVGLALSASGIRMSRQVKFIRENIEDQSIIENARESGKTLEDLKAKIRIPNHTIFRQIFVLYVLPVFIGVIAWFLIKFLNW

Flanking regions ( +/- flanking 50bp)

CCCGTTTTCTGCGTTATCATTAGCGTTAAAAGATAAAATGAGGAAAACGAATGACGTTGCAACAGGCTCGCTGGCTCGCAGTGTTTAAACGTGTGGCAGGGTGGGTGGTGTTTATTCCTGCGCTGATTTCAACCATAGTCTCTTTACTGAAGCTGGCGCATCAGCAAAGCACTGCCAGTGACAAGATTAATGCCGTTATCGGGGATTTTATTAACGTTGTCACTGAAATGATCCGGGTTAATACGCCGTTCCTGAATGTATTCTGGCGCAACTCACCTACGCCGGACAAATTACTGGGAACTGAGAGTTATAATTTAAGCTTTTTACTGATCTATATTCTGATGTTTGTTGGTCTGGCGCTGAGTGCATCCGGGATCCGCATGTCAAGACAGGTGAAGTTTATCCGGGAAAATATTGAAGATCAGAGCATTATTGAAAATGCCAGAGAGAGCGGAAAAACACTTGAGGACTTAAAAGCCAAAATTCGTATTCCGAACCACACTATTTTCCGTCAGATTTTTGTGTTGTATGTACTCCCTGTATTTATAGGCGTGATTGCATGGTTTTTAATTAAGTTTCTTAACTGGTAATTCCGGCGGGTTATCTGAAAGCATCCAACGAACCTGCAGTTTGAATGAAT