Homologs in group_2186

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_16460 FBDBKF_16460 94.2 Morganella morganii S1 yegQ tRNA 5-hydroxyuridine modification protein YegQ
EHELCC_08325 EHELCC_08325 94.2 Morganella morganii S2 yegQ tRNA 5-hydroxyuridine modification protein YegQ
NLDBIP_08650 NLDBIP_08650 94.2 Morganella morganii S4 yegQ tRNA 5-hydroxyuridine modification protein YegQ
LHKJJB_05615 LHKJJB_05615 94.2 Morganella morganii S3 yegQ tRNA 5-hydroxyuridine modification protein YegQ
HKOGLL_05300 HKOGLL_05300 94.2 Morganella morganii S5 yegQ tRNA 5-hydroxyuridine modification protein YegQ
PMI_RS07755 PMI_RS07755 87.8 Proteus mirabilis HI4320 yegQ tRNA 5-hydroxyuridine modification protein YegQ

Distribution of the homologs in the orthogroup group_2186

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2186

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76403 0.0 784 83 0 451 1 trhP tRNA hydroxylation protein P Escherichia coli (strain K12)
P44700 0.0 761 78 2 454 3 trhP tRNA hydroxylation protein P Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P56113 1.26e-73 241 39 10 369 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZMR3 1.35e-73 240 39 10 369 3 trhP tRNA hydroxylation protein P Helicobacter pylori (strain J99 / ATCC 700824)
O32034 2.46e-67 224 32 9 420 3 trhP1 tRNA hydroxylation protein P1 Bacillus subtilis (strain 168)
Q57555 2.69e-54 189 33 12 402 3 MJ0090 Uncharacterized protease MJ0090 Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
O32035 1.02e-37 142 30 6 316 3 trhP2 tRNA hydroxylation protein P2 Bacillus subtilis (strain 168)
P45527 3.86e-34 134 29 10 321 1 ubiU Ubiquinone biosynthesis protein UbiU Escherichia coli (strain K12)
P76104 2.8e-32 133 27 6 370 1 rlhA 23S rRNA 5-hydroxycytidine C2501 synthase Escherichia coli (strain K12)
P59916 3.05e-26 113 24 11 407 3 prtC Collagenase Porphyromonas gingivalis (strain ATCC BAA-308 / W83)
P33437 5.42e-10 64 22 13 355 1 prtC Collagenase (Fragment) Porphyromonas gingivalis

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02975
Feature type CDS
Gene yegQ
Product tRNA 5-hydroxyuridine modification protein YegQ
Location 630747 - 632138 (strand: -1)
Length 1392 (nucleotides) / 463 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2186
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01136 Peptidase family U32
PF16325 Peptidase family U32 C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0826 Translation, ribosomal structure and biogenesis (J) J 23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K08303 U32 family peptidase [EC:3.4.-.-] Epithelial cell signaling in Helicobacter pylori infection -

Protein Sequence

MFTPELLSPAGSLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLAIGIKEAHEQGKRFYVVVNIAPHNAKLKTFIRDLEPVIAMEPDALIMSDPGLIMMVREHFPQMDIHLSVQANAVNWATVKFWHQMGLTRVILSRELSLEEIADIRKNVPEIELEVFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYKVEEGKEDVVGNIVHKQEPIRVKNIEPTLGAGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIEHVEKLTQMGVHSLKIEGRTKSFYYCARTAQVYRRAIDDAVAGKPFDASLLTTLEGLAHRGYTEGFLRRHTHESYQTYEYGYSVSDSQQFVGEFTGKRVDGLAEVDVKNKFLVGDSLELMTPDGNISFTLDSITTRKGESTDVAPGNGHIVYLPVPDDVDLEFALLIRNLPGTSTRNPHVPDAIDAAAATK

Flanking regions ( +/- flanking 50bp)

CGCCCTGCCTTACCGGCAGGGTGCTGACTTGAACTCAGACGGAATACAACATGTTTACACCTGAATTACTCTCTCCGGCGGGATCGCTGAAGAATATGCGCTATGCGTTTGCTTATGGTGCCGATGCCGTTTATGCGGGACAACCCCGCTACAGCCTGCGCGTGCGTAACAACGAATTCAATCACGAAAACCTCGCAATAGGCATTAAAGAAGCCCACGAACAGGGCAAACGATTCTATGTCGTGGTGAATATCGCGCCTCATAATGCCAAACTGAAAACCTTTATCCGTGATCTGGAACCGGTCATTGCGATGGAGCCGGATGCACTGATTATGTCTGATCCCGGCCTTATCATGATGGTGCGCGAGCACTTCCCGCAGATGGACATCCATTTATCTGTCCAGGCGAATGCCGTTAACTGGGCGACAGTGAAATTCTGGCATCAGATGGGACTGACCCGTGTGATCCTCTCCCGCGAACTGTCTCTTGAAGAGATAGCCGATATCCGCAAAAATGTGCCGGAAATCGAGCTGGAAGTCTTTGTCCACGGCGCGCTGTGTATGGCTTACTCCGGCCGCTGCCTGCTCTCCGGATATATCAATAAGCGCGACCCGAACCAGGGTACCTGCACCAATGCCTGCCGCTGGGAATATAAAGTGGAAGAAGGCAAAGAAGATGTGGTCGGTAATATTGTCCACAAGCAGGAGCCTATCCGGGTAAAAAATATTGAACCAACCCTCGGTGCCGGTGCACCGACTGACAAAGTGTTCATGATTGAAGAAGCACAGCGTCCGGGTGAATATATGACCGCGTTCGAAGATGAGCACGGCACTTATATTATGAACTCCAAAGATCTGCGGGCAATCGAGCACGTAGAGAAGCTGACACAGATGGGTGTGCATTCCCTGAAAATTGAAGGACGCACAAAATCCTTCTATTACTGCGCCCGCACCGCACAGGTTTACCGCCGCGCCATTGATGACGCCGTTGCCGGAAAACCGTTTGATGCATCCCTGCTGACTACGCTCGAAGGTCTGGCACATCGTGGTTACACAGAAGGCTTCCTGCGCCGTCATACCCATGAGTCTTATCAGACCTATGAGTACGGTTACTCTGTTTCCGATTCGCAGCAGTTTGTCGGTGAATTTACCGGTAAACGTGTGGATGGTCTTGCCGAAGTCGATGTGAAAAATAAATTTCTTGTCGGCGACAGCCTGGAACTGATGACGCCGGACGGCAATATCAGCTTCACTCTGGATTCAATAACCACCCGTAAAGGTGAATCCACTGATGTGGCACCGGGTAACGGACATATTGTATATCTGCCGGTTCCTGATGATGTTGACCTGGAATTTGCTTTGCTTATCCGTAACTTACCGGGTACAAGCACACGTAACCCGCATGTTCCTGACGCCATTGATGCCGCTGCGGCAACAAAATAGGTAAATGTTCTGAATTTTCGAAACCGATCACAACAATCACTCCGGTTATT