Homologs in group_2439

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_19940 FBDBKF_19940 67.3 Morganella morganii S1 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
EHELCC_07675 EHELCC_07675 67.3 Morganella morganii S2 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
NLDBIP_08000 NLDBIP_08000 67.3 Morganella morganii S4 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
LHKJJB_06265 LHKJJB_06265 67.3 Morganella morganii S3 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
HKOGLL_19120 HKOGLL_19120 67.3 Morganella morganii S5 acrR DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA
PMI_RS09200 PMI_RS09200 53.6 Proteus mirabilis HI4320 - CerR family C-terminal domain-containing protein

Distribution of the homologs in the orthogroup group_2439

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2439

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ACU1 5.69e-26 103 30 4 220 3 cecR HTH-type transcriptional dual regulator CecR Shigella flexneri
P0ACU0 5.69e-26 103 30 4 220 1 cecR HTH-type transcriptional dual regulator CecR Escherichia coli (strain K12)
P0ACU4 1.27e-05 48 28 0 70 3 rutR HTH-type transcriptional regulator RutR Shigella flexneri
P0ACU2 1.27e-05 48 28 0 70 1 rutR HTH-type transcriptional regulator RutR Escherichia coli (strain K12)
P0ACU3 1.27e-05 48 28 0 70 3 rutR HTH-type transcriptional regulator RutR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8X4Z7 1.31e-05 47 28 0 70 3 rutR HTH-type transcriptional regulator RutR Escherichia coli O157:H7
Q9R9T9 0.001 42 31 0 60 1 srpR HTH-type transcriptional regulator SrpR Pseudomonas putida

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02425
Feature type CDS
Gene -
Product CerR family C-terminal domain-containing protein
Location 513190 - 513852 (strand: 1)
Length 663 (nucleotides) / 220 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2439
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00440 Bacterial regulatory proteins, tetR family
PF09209 HTH-type transcriptional dual regulator CecR, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1309 Transcription (K) K DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K23777 TetR/AcrR family transcriptional regulator, regulator of cefoperazone and chloramphenicol sensitivity - -

Protein Sequence

MQKTNKHTVSSEQTREKLIQTGIRLFALYGMNGVRTRQLAEEAGVNQSAIPYHLDGKQGVYAAVIRKITDDLAEMTNAAQADAALQQLALEPEPDKESLRRVLVSLMKGLGQALLSPDHALYAQLILREQLEQTEHYDVIYHTFILPVHERLTSLIRLVEPETDMQTAIIAAHALIGQVLGFVVAKKAYLRRSGLEMISDNELPLILHQITGLSCRALGL

Flanking regions ( +/- flanking 50bp)

CCAGACTGATGCGCGCTGATATCTGACATTCTGATGGGTAACCGCAGTATATGCAAAAAACGAATAAGCACACCGTATCATCGGAACAAACCAGAGAGAAGCTGATACAGACAGGGATCCGCCTGTTTGCGCTCTACGGGATGAATGGTGTCCGTACCCGGCAGTTGGCGGAGGAAGCCGGTGTTAATCAATCGGCTATTCCGTATCATCTGGACGGAAAGCAGGGCGTGTATGCCGCGGTTATCCGGAAAATTACAGATGATTTGGCAGAGATGACAAATGCAGCGCAGGCTGATGCCGCATTGCAGCAGCTTGCGCTAGAGCCGGAACCGGATAAAGAGTCACTCAGGCGCGTGTTAGTCAGTCTGATGAAGGGGTTGGGACAGGCGCTGTTGTCGCCGGATCATGCACTGTATGCACAATTGATTCTGCGCGAGCAACTGGAGCAGACTGAGCACTATGATGTTATCTATCATACGTTTATCCTGCCGGTTCACGAACGGCTGACATCCCTTATCCGTCTGGTTGAGCCTGAAACCGATATGCAGACTGCCATTATTGCCGCACACGCACTGATCGGGCAGGTTCTGGGATTTGTGGTGGCAAAAAAAGCCTATCTGCGCCGCAGCGGGCTTGAAATGATCAGCGATAATGAATTGCCGCTTATTCTGCACCAGATAACCGGCTTATCCTGTCGTGCGCTGGGACTTTGATGGTAGCTGACTGTCGTGCCGGTTTACGGCACGACAGGTTTGTTTATCAC