Homologs in group_553

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01350 FBDBKF_01350 66.3 Morganella morganii S1 tssA type VI secretion system protein TssA
EHELCC_00195 EHELCC_00195 66.3 Morganella morganii S2 tssA type VI secretion system protein TssA
NLDBIP_03265 NLDBIP_03265 66.3 Morganella morganii S4 tssA type VI secretion system protein TssA
LHKJJB_04780 LHKJJB_04780 66.3 Morganella morganii S3 tssA type VI secretion system protein TssA
HKOGLL_02265 HKOGLL_02265 66.3 Morganella morganii S5 tssA type VI secretion system protein TssA
PMI_RS03625 PMI_RS03625 46.3 Proteus mirabilis HI4320 tssA type VI secretion system protein TssA

Distribution of the homologs in the orthogroup group_553

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_553

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS02320
Feature type CDS
Gene tssA
Product type VI secretion system protein TssA
Location 492131 - 493591 (strand: -1)
Length 1461 (nucleotides) / 486 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_553
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF06812 ImpA, N-terminal, type VI secretion system
PF16989 Type VI secretion, EvfE, EvfF, ImpA, BimE, VC_A0119, VasJ

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3515 Intracellular trafficking, secretion, and vesicular transport (U) U Type VI protein secretion system component TssA1/VasJ/EvfE, contains ImpA_N domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11910 type VI secretion system protein VasJ - -

Protein Sequence

MIATRFNWSEQLLAPLETSLLHSAIDDGDTDWEFIDSGMIKFGSLTHASLDVAAIQSRTLNLLATRTKDFRLVVHLLRTLQHAGEPDEITLAVQLFSQFCRQFWNDCFPANKRIKLRLTQQVLQRFELAQSGFTREATPEQRDNVLGDFAGLAQFWRTEYPELSQTLDALSTGYRRIESREPDDIVSSVHASLLTAEKITPPALTTAQNNPAALSPDEAVPVNDIDTGNDRSRKNALLAVADLLCRRAPENAVGYLLRRYAIWHTIQTVPATTSGGKTPLASVSPDRVMDYREKIVHATPALLTEIEQSLSLAPYWLDGHYLAAQAADRLGFHQAAQAIRQSAAEFTARIPALSSCLFSDMTPFISAETADWLAASSSPAGIPGASSDGQIPRDEITRCYTEDGLNAALQKIDDAINKAEQPRDRVYLQLLAASFIEQSGMSGLAQAHYQQLYYTVLHSSVEQWEPALLRQLAEKIPDSDFKRNIV

Flanking regions ( +/- flanking 50bp)

CTGGTTCAGAGTATCAAACCATTGCGTGCGGCCTGCCGTTGGTGAAAATAATGATAGCGACACGATTTAACTGGTCAGAGCAACTGCTGGCACCACTGGAAACATCATTACTGCATAGTGCAATTGATGATGGTGATACTGACTGGGAATTTATTGACAGCGGAATGATTAAATTCGGCTCTCTTACACATGCGTCCCTTGATGTCGCAGCCATTCAGTCCCGTACACTGAATCTGCTGGCAACGCGGACAAAAGACTTCCGGTTGGTTGTTCATCTGCTGCGCACACTCCAGCACGCGGGAGAGCCGGATGAAATTACCCTTGCGGTGCAACTTTTTTCTCAGTTTTGCCGGCAATTCTGGAATGACTGCTTTCCTGCCAATAAACGGATAAAACTTCGCCTGACCCAACAGGTCTTACAACGTTTTGAACTGGCACAATCCGGTTTCACCCGTGAAGCAACACCAGAACAACGGGATAATGTCCTGGGCGATTTTGCCGGTCTGGCACAATTCTGGCGCACAGAATACCCGGAACTGTCTCAGACACTGGATGCACTAAGCACCGGATATCGCAGGATAGAAAGCCGTGAACCGGATGATATCGTGTCGTCTGTTCACGCTTCGCTGCTAACGGCAGAAAAAATCACACCGCCGGCCTTAACCACGGCGCAAAACAATCCGGCAGCCTTGTCACCGGATGAGGCTGTTCCGGTCAATGATATCGATACCGGCAATGATCGCTCGCGGAAAAATGCATTACTGGCTGTCGCTGATTTATTATGCCGCCGGGCACCGGAGAACGCTGTCGGGTATCTGTTACGCCGTTATGCTATCTGGCACACAATACAGACTGTTCCGGCAACCACTTCCGGCGGGAAAACGCCGTTAGCCTCCGTTTCACCGGACAGAGTAATGGATTACCGGGAAAAAATCGTTCACGCAACTCCCGCTCTGCTCACAGAAATCGAACAAAGCCTGAGCCTCGCCCCCTACTGGCTCGACGGGCACTATCTTGCCGCACAGGCAGCCGACCGGCTGGGATTTCATCAGGCAGCGCAGGCTATCCGGCAATCCGCAGCAGAATTTACTGCCCGGATACCCGCGCTGTCATCTTGCCTGTTCTCTGATATGACGCCTTTTATCTCTGCTGAAACGGCAGACTGGCTGGCAGCGTCATCATCACCGGCAGGTATACCGGGAGCGTCATCTGACGGACAGATACCCCGCGACGAAATTACCCGTTGCTATACCGAAGACGGACTGAATGCCGCACTGCAAAAAATCGACGATGCCATAAATAAAGCAGAACAGCCGCGTGATCGTGTTTATCTGCAACTACTGGCCGCCTCATTTATTGAACAGTCGGGAATGTCCGGGCTGGCACAGGCTCACTATCAGCAACTTTATTATACGGTACTGCACAGCAGTGTTGAGCAGTGGGAACCCGCGTTACTACGGCAACTCGCAGAAAAAATACCGGACTCAGATTTTAAAAGGAATATTGTGTGATGAAAAAACCATCATTGCCATCAGTAAATGTGCAGGGGCTGTTCAGAAAA