Homologs in group_563

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01450 FBDBKF_01450 88.3 Morganella morganii S1 rseB sigma-E factor regulatory protein RseB
EHELCC_00095 EHELCC_00095 88.3 Morganella morganii S2 rseB sigma-E factor regulatory protein RseB
NLDBIP_03365 NLDBIP_03365 88.3 Morganella morganii S4 rseB sigma-E factor regulatory protein RseB
LHKJJB_04880 LHKJJB_04880 88.3 Morganella morganii S3 rseB sigma-E factor regulatory protein RseB
HKOGLL_02165 HKOGLL_02165 88.3 Morganella morganii S5 rseB sigma-E factor regulatory protein RseB
PMI_RS09340 PMI_RS09340 53.0 Proteus mirabilis HI4320 rseB sigma-E factor regulatory protein RseB

Distribution of the homologs in the orthogroup group_563

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_563

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFY1 3.71e-103 308 47 4 320 3 rseB Sigma-E factor regulatory protein RseB Shigella flexneri
P0AFX9 3.71e-103 308 47 4 320 1 rseB Sigma-E factor regulatory protein RseB Escherichia coli (strain K12)
P0AFY0 3.71e-103 308 47 4 320 3 rseB Sigma-E factor regulatory protein RseB Escherichia coli O157:H7
D0ZSY7 6.14e-101 302 45 4 317 3 rseB Sigma-E factor regulatory protein RseB Salmonella typhimurium (strain 14028s / SGSC 2262)
P44792 8.01e-60 197 35 6 320 3 rseB Sigma-E factor regulatory protein RseB Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P38108 7.25e-14 74 24 11 307 1 mucB Sigma factor AlgU regulatory protein MucB Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01955
Feature type CDS
Gene rseB
Product sigma-E factor regulatory protein RseB
Location 426652 - 427608 (strand: 1)
Length 957 (nucleotides) / 318 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_563
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03888 MucB/RseB N-terminal domain
PF17188 MucB/RseB C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3026 Signal transduction mechanisms (T) T RseB, negative regulator of sigma E activity

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03598 sigma-E factor negative regulatory protein RseB - -

Protein Sequence

MKRIWLSVVLLTGSLLSAAPASAQSQSAEALLQKMGDASRTLNYELAFITISPKGIIPVRYRHAQMNGQPVAQIMQMDSSRREIVQRGQEISYYEPGLDSFSLTGNHIVDYLPAIIFADFSALKAYYNFIDVGRIHIGDHPGRVVRITSKDNSRYNYIVVVDEESGLPLQVELLDLNNVSLEQFRVVSVSVNSPGVTESLKAIQAVTMPPVLAIPQSENIKFDWDVMRLPNGFKELTRNRRQVGAQEWIETVMFSDGVFSFSVNVAKAVKIPENQQTLRQGSRTLYTLRKGNNEITIFGELPMATARQVADGVTFSGG

Flanking regions ( +/- flanking 50bp)

CGCCCCGAAACAGGGTAGTGTGTCCCGCCAATCACAGCCGTAGTGTGGTAATGAAACGAATCTGGTTATCCGTTGTTCTCCTGACGGGCAGCCTGTTATCTGCAGCACCTGCCTCAGCACAATCACAAAGTGCTGAGGCATTGTTGCAGAAAATGGGTGATGCTTCCCGTACTCTCAATTATGAACTTGCTTTTATTACCATTTCCCCGAAAGGCATTATTCCTGTCCGTTACCGCCATGCGCAGATGAACGGGCAGCCGGTTGCACAAATTATGCAGATGGACAGCTCGCGGCGGGAAATCGTCCAGCGGGGTCAGGAAATCAGCTATTATGAACCGGGGCTGGACTCATTCAGTCTGACCGGTAACCATATTGTTGATTATCTGCCAGCTATTATTTTTGCCGATTTTTCTGCACTGAAAGCCTATTATAATTTTATTGATGTGGGTCGCATTCATATCGGGGATCACCCGGGACGCGTAGTGCGGATCACGTCAAAAGATAACTCCCGTTATAACTATATTGTTGTCGTAGATGAAGAGAGCGGTCTGCCGCTCCAGGTCGAGTTACTGGATCTGAACAATGTTTCGCTGGAGCAGTTCCGTGTGGTGTCTGTGTCGGTAAACAGTCCCGGTGTGACGGAATCGCTGAAAGCAATACAGGCGGTGACTATGCCGCCTGTCCTCGCGATTCCTCAGTCTGAGAATATAAAATTTGACTGGGATGTTATGCGTCTGCCGAACGGGTTTAAAGAACTGACCCGCAACCGCCGTCAGGTCGGTGCACAAGAGTGGATTGAAACCGTGATGTTCAGTGACGGGGTATTCTCGTTTTCAGTGAATGTCGCGAAGGCAGTTAAGATCCCAGAAAATCAACAGACATTGCGCCAGGGTTCACGTACGCTGTATACCTTACGTAAAGGTAATAACGAAATCACGATTTTTGGTGAATTGCCGATGGCGACAGCCAGGCAGGTTGCTGACGGGGTGACGTTCAGCGGAGGTTGATATGGTGAAAGAATGGGCGACCGTCGTGCGCTGGCAGGACGGGCGCGCGG