COG3026


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3026, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description RseB, negative regulator of sigma E activity
Function(s) descr. Signal transduction mechanisms (T)

Occurence in the database

COG3026 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_563 FBDBKF_01450 289050 290003 -1 rseB sigma-E factor regulatory protein RseB Morganella morganii S1
1 group_563 EHELCC_00095 18865 19818 1 rseB sigma-E factor regulatory protein RseB Morganella morganii S2
2 group_563 NLDBIP_03365 660318 661271 -1 rseB sigma-E factor regulatory protein RseB Morganella morganii S4
3 group_563 LHKJJB_04880 267559 268512 -1 rseB sigma-E factor regulatory protein RseB Morganella morganii S3
4 group_563 HKOGLL_02165 19070 20023 1 rseB sigma-E factor regulatory protein RseB Morganella morganii S5
5 group_563 F4V73_RS01955 426652 427608 1 rseB sigma-E factor regulatory protein RseB Morganella psychrotolerans
6 group_563 PMI_RS09340 2038935 2039906 -1 rseB sigma-E factor regulatory protein RseB Proteus mirabilis HI4320