Homologs in group_564

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01455 FBDBKF_01455 83.9 Morganella morganii S1 rseA anti-sigma-E factor RseA
EHELCC_00090 EHELCC_00090 83.9 Morganella morganii S2 rseA anti-sigma-E factor RseA
NLDBIP_03370 NLDBIP_03370 83.9 Morganella morganii S4 rseA anti-sigma-E factor RseA
LHKJJB_04885 LHKJJB_04885 83.9 Morganella morganii S3 rseA anti-sigma-E factor RseA
HKOGLL_02160 HKOGLL_02160 83.9 Morganella morganii S5 rseA anti-sigma-E factor RseA
PMI_RS09345 PMI_RS09345 54.9 Proteus mirabilis HI4320 rseA anti-sigma-E factor RseA

Distribution of the homologs in the orthogroup group_564

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_564

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
D0ZSY8 1.54e-67 209 57 2 190 1 rseA Anti-sigma-E factor RseA Salmonella typhimurium (strain 14028s / SGSC 2262)
P0AFX7 6.89e-64 200 55 2 190 1 rseA Anti-sigma-E factor RseA Escherichia coli (strain K12)
P0AFX8 6.89e-64 200 55 2 190 3 rseA Anti-sigma-E factor RseA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44791 2.66e-30 113 34 3 190 3 rseA Anti-sigma-E factor RseA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P38107 0.000266 43 35 6 125 1 mucA Sigma factor AlgU negative regulatory protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01950
Feature type CDS
Gene rseA
Product anti-sigma-E factor RseA
Location 426009 - 426644 (strand: 1)
Length 636 (nucleotides) / 211 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_564
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03872 Anti sigma-E protein RseA, N-terminal domain
PF03873 Anti sigma-E protein RseA, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3073 Signal transduction mechanisms (T) T RseA, negative regulator of sigma E activity

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03597 sigma-E factor negative regulatory protein RseA - -

Protein Sequence

MQKETLSALMDGETLDSEWVTGLTSDTDLQKSWSDYHLIRDAMRGDLPDVMHFDIAARVADALAQEPVYITPQAIPESQPEPKTWRDYSFVAKLRPWASQFTQIGMAACVSLAVIVGVQQYNTDGTESVATGDASAFNTVPFMGSASPVSLDLKSGAGLAPQSQMDQERGARLNAILQQYELDRRAHTDGQSDVKPTSAPKQGSVSRQSQP

Flanking regions ( +/- flanking 50bp)

CACTGATACAATATTAGTGAGCGCTTAACAACACTGAAGGGAACTTTGGCATGCAAAAAGAGACACTTTCCGCACTGATGGACGGAGAAACTCTTGACAGTGAATGGGTTACCGGACTGACAAGTGATACAGACCTGCAAAAAAGCTGGTCAGATTATCATCTTATCCGCGATGCAATGCGTGGAGACTTGCCTGATGTCATGCATTTTGACATCGCAGCCCGGGTAGCTGATGCACTGGCGCAGGAGCCGGTTTATATTACACCTCAGGCTATTCCCGAATCTCAGCCTGAACCGAAAACATGGCGTGACTACAGTTTTGTTGCCAAATTGCGCCCGTGGGCCAGTCAGTTTACACAGATTGGTATGGCTGCATGTGTTTCACTCGCGGTCATCGTGGGTGTTCAGCAGTATAATACTGACGGCACTGAGAGTGTGGCAACAGGTGATGCATCTGCTTTTAACACTGTTCCGTTTATGGGCAGCGCCTCACCGGTCAGCCTTGATCTGAAAAGTGGCGCAGGTCTTGCACCTCAGAGTCAGATGGATCAGGAACGCGGTGCGCGTCTGAACGCTATCTTACAGCAGTATGAACTGGATCGCCGTGCTCACACTGACGGTCAGTCTGATGTTAAACCGACATCCGCCCCGAAACAGGGTAGTGTGTCCCGCCAATCACAGCCGTAGTGTGGTAATGAAACGAATCTGGTTATCCGTTGTTCTCCTGACGGGCAGCC