Homologs in group_564

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01455 FBDBKF_01455 100.0 Morganella morganii S1 rseA anti-sigma-E factor RseA
EHELCC_00090 EHELCC_00090 100.0 Morganella morganii S2 rseA anti-sigma-E factor RseA
LHKJJB_04885 LHKJJB_04885 100.0 Morganella morganii S3 rseA anti-sigma-E factor RseA
HKOGLL_02160 HKOGLL_02160 100.0 Morganella morganii S5 rseA anti-sigma-E factor RseA
F4V73_RS01950 F4V73_RS01950 83.9 Morganella psychrotolerans rseA anti-sigma-E factor RseA
PMI_RS09345 PMI_RS09345 53.9 Proteus mirabilis HI4320 rseA anti-sigma-E factor RseA

Distribution of the homologs in the orthogroup group_564

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_564

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
D0ZSY8 1.17e-67 209 55 2 190 1 rseA Anti-sigma-E factor RseA Salmonella typhimurium (strain 14028s / SGSC 2262)
P0AFX7 2.95e-64 201 54 2 190 1 rseA Anti-sigma-E factor RseA Escherichia coli (strain K12)
P0AFX8 2.95e-64 201 54 2 190 3 rseA Anti-sigma-E factor RseA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P44791 3.97e-29 110 32 3 190 3 rseA Anti-sigma-E factor RseA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P38107 4.24e-06 48 35 5 125 1 mucA Sigma factor AlgU negative regulatory protein Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_03370
Feature type CDS
Gene rseA
Product anti-sigma-E factor RseA
Location 661274 - 661909 (strand: -1)
Length 636 (nucleotides) / 211 (amino acids)

Contig

Accession ZDB_519
Length 680340 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_564
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03872 Anti sigma-E protein RseA, N-terminal domain
PF03873 Anti sigma-E protein RseA, C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3073 Signal transduction mechanisms (T) T RseA, negative regulator of sigma E activity

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03597 sigma-E factor negative regulatory protein RseA - -

Protein Sequence

MQKETLSALMDGETLDSEVVTALTQDADLQAEWAGYHLIRDTMRGDLPDVMHFDIASRVAEALAQEPVYIAPQAIPESQPEPKTWRDYGFVAKLRPWASQLTQIGMAACVSLAVIIGVQHYNTDGTESVVNGDASAFNTVPFMGSASPVSLDLKNGAGLAPQTRFDQERGARLNAIFQQYELDRRVHTDGQPEVKQTATPEQGRVSSQPQQ

Flanking regions ( +/- flanking 50bp)

ACTGATACAAAATCAGTGAGCACTTAAATCACACTGAAGGGAACGTAGGCATGCAAAAAGAGACACTTTCCGCACTGATGGACGGAGAAACTCTTGACAGTGAAGTGGTTACCGCACTGACACAGGATGCAGATCTGCAGGCAGAATGGGCTGGTTATCACCTTATCCGTGATACCATGCGCGGCGACCTGCCGGATGTTATGCATTTTGATATTGCGTCACGGGTAGCTGAAGCACTGGCGCAGGAGCCGGTTTATATCGCACCTCAGGCGATCCCTGAGTCTCAGCCTGAACCGAAAACATGGCGTGATTACGGATTTGTGGCAAAACTGCGCCCGTGGGCCAGTCAGTTAACACAAATCGGTATGGCAGCCTGTGTATCACTGGCCGTGATTATCGGTGTTCAGCACTATAATACCGACGGCACAGAGAGCGTGGTTAACGGTGATGCATCCGCATTCAATACCGTTCCGTTTATGGGCAGTGCGTCACCTGTCAGCCTCGATCTGAAAAACGGCGCCGGTCTTGCCCCGCAAACCCGTTTTGATCAGGAGCGCGGTGCGCGTCTGAATGCGATTTTCCAGCAGTATGAACTGGATCGCCGTGTACACACGGATGGTCAGCCTGAAGTTAAACAGACAGCCACCCCGGAACAGGGTCGCGTGTCTTCACAACCACAGCAGTAGTAATGAAACGAATCTGGTTATCCGTTGCTTTTCTGACGGGCAGCCTGTTA