Orthogroup:group_564


Homologs in group_564

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_01455 FBDBKF_01455 Morganella morganii S1 rseA anti-sigma-E factor RseA
EHELCC_00090 EHELCC_00090 Morganella morganii S2 rseA anti-sigma-E factor RseA
NLDBIP_03370 NLDBIP_03370 Morganella morganii S4 rseA anti-sigma-E factor RseA
LHKJJB_04885 LHKJJB_04885 Morganella morganii S3 rseA anti-sigma-E factor RseA
HKOGLL_02160 HKOGLL_02160 Morganella morganii S5 rseA anti-sigma-E factor RseA
F4V73_RS01950 F4V73_RS01950 Morganella psychrotolerans rseA anti-sigma-E factor RseA
PMI_RS09345 PMI_RS09345 Proteus mirabilis HI4320 rseA anti-sigma-E factor RseA

Distribution of group_564 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_564 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_564

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_564.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rseA 7

Product

# Product Occurence
1 anti-sigma-E factor RseA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG3073 7 T Signal transduction mechanisms (T) RseA, negative regulator of sigma E activity

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03597 7 sigma-E factor negative regulatory protein RseA - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03872 7 Anti sigma-E protein RseA, N-terminal domain
PF03873 7 Anti sigma-E protein RseA, C-terminal domain

Annotations of the 5 SwissProt hits

Annotation Number of occurrences
Anti-sigma-E factor RseA 4
Sigma factor AlgU negative regulatory protein 1

Protein length

Min length 211
Max length 219
Mean length (sd) 212.1 (3.0)
Median length 211.0

Protein length distribution