Homologs in group_3045

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18185 FBDBKF_18185 75.4 Morganella morganii S1 soxR DNA-binding transcriptional regulator, MerR family
EHELCC_18220 EHELCC_18220 75.4 Morganella morganii S2 soxR DNA-binding transcriptional regulator, MerR family
NLDBIP_18145 NLDBIP_18145 75.4 Morganella morganii S4 soxR DNA-binding transcriptional regulator, MerR family
LHKJJB_18340 LHKJJB_18340 75.4 Morganella morganii S3 soxR DNA-binding transcriptional regulator, MerR family
HKOGLL_18075 HKOGLL_18075 75.4 Morganella morganii S5 soxR DNA-binding transcriptional regulator, MerR family

Distribution of the homologs in the orthogroup group_3045

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3045

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
O06008 1.34e-18 78 30 1 115 1 adhR HTH-type transcriptional regulator AdhR Bacillus subtilis (strain 168)
P44558 1.37e-18 78 34 1 114 1 HI_0186 Uncharacterized HTH-type transcriptional regulator HI_0186 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37510 3.59e-14 67 33 3 130 4 yyaN Uncharacterized HTH-type transcriptional regulator YyaN Bacillus subtilis (strain 168)
P44617 4.3e-09 53 32 1 104 3 HI_0293 Probable heavy metal-dependent transcriptional regulator HI_0293 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P40183 2.07e-07 50 37 1 72 2 hspR Putative heat shock protein HspR Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
P0C6D2 3.31e-07 49 28 1 107 3 cueR HTH-type transcriptional regulator CueR Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
A5F2W6 3.31e-07 49 28 1 107 3 cueR HTH-type transcriptional regulator CueR Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
O06474 6.43e-07 48 27 3 119 2 yfmP HTH-type transcriptional regulator YfmP Bacillus subtilis (strain 168)
Q9X5V4 1.81e-06 47 29 4 110 4 hmrR HTH-type transcriptional regulator HmrR Rhizobium leguminosarum bv. viciae
P22874 2.7e-06 46 36 1 65 4 merR Mercuric resistance operon regulatory protein Staphylococcus aureus
P22853 6.8e-06 45 32 1 65 1 merR1 Mercuric resistance operon regulatory protein Bacillus cereus
Q53W62 6.91e-06 47 40 2 67 1 carH HTH-type transcriptional repressor CarH Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
P0A4T9 7.28e-06 46 31 3 100 1 tipA HTH-type transcriptional activator TipA Streptomyces lividans
P0A4T8 7.28e-06 46 31 3 100 3 tipA HTH-type transcriptional activator TipA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
O07586 9.08e-06 45 33 0 63 4 cueR HTH-type transcriptional regulator CueR Bacillus subtilis (strain 168)
P50330 1.81e-05 45 35 1 70 4 nolA Nodulation protein NolA Bradyrhizobium sp. (strain NC92)
P45277 2.45e-05 43 25 1 85 3 zntR HTH-type transcriptional regulator ZntR homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q45666 3.86e-05 43 31 2 85 1 tnrA HTH-type transcriptional regulator TnrA Bacillus subtilis (strain 168)
Q8ZCA8 5.09e-05 43 31 1 63 3 cueR HTH-type transcriptional regulator CueR Yersinia pestis
P50329 9.36e-05 43 32 2 96 4 nolA Nodulation protein NolA (Fragment) Bradyrhizobium elkanii
P37582 0.000152 42 33 0 63 1 glnR HTH-type transcriptional regulator GlnR Bacillus subtilis (strain 168)
Q8FK74 0.000158 42 28 1 60 3 cueR HTH-type transcriptional regulator CueR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q8Z8S3 0.000168 42 27 1 68 3 cueR HTH-type transcriptional regulator CueR Salmonella typhi
Q93CH6 0.000171 42 27 1 68 1 cueR HTH-type transcriptional regulator CueR Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0A9G5 0.000172 42 28 1 60 3 cueR HTH-type transcriptional regulator CueR Shigella flexneri
P0A9G4 0.000172 42 28 1 60 1 cueR HTH-type transcriptional regulator CueR Escherichia coli (strain K12)
Q8XD09 0.000175 42 28 1 60 3 cueR HTH-type transcriptional regulator CueR Escherichia coli O157:H7
P22896 0.000405 40 34 1 64 4 merR Mercuric resistance operon regulatory protein (Fragment) Acidithiobacillus ferrooxidans

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01730
Feature type CDS
Gene -
Product MerR family transcriptional regulator
Location 383795 - 384163 (strand: -1)
Length 369 (nucleotides) / 122 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3045
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF13411 MerR HTH family regulatory protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0789 Transcription (K) K DNA-binding transcriptional regulator, MerR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21745 MerR family transcriptional regulator, aldehyde-responsive regulator - -

Protein Sequence

MYYSISQFSALTGFSIHTLRFYEKTGILAPLRRANNHRSYSARDVEWVTFITRLKETGMSLKSIKYYADLRAQGDETAQARMLLLQEHNETLRQQIAVLNESVQHLDKKINYYNALLNTGTK

Flanking regions ( +/- flanking 50bp)

TAGTCAGCGGAGCGTAAAAGATAGAGTGAACTCAAGGTCAAGAGGTGTGTATGTATTATTCAATCAGCCAGTTTTCTGCATTAACCGGTTTCAGCATCCATACCCTGCGGTTTTATGAGAAAACAGGTATTCTGGCACCTCTGCGCCGGGCAAATAATCACCGCAGTTACTCCGCCCGTGATGTCGAATGGGTAACCTTTATTACACGGCTGAAAGAAACAGGGATGTCGCTGAAATCCATAAAATATTATGCAGATTTACGGGCGCAGGGAGATGAAACAGCACAGGCGCGCATGCTGTTATTGCAGGAGCACAATGAGACATTGCGCCAACAGATAGCGGTACTCAATGAGAGTGTTCAGCACCTGGATAAAAAAATCAATTACTACAATGCGTTACTTAATACCGGCACAAAGTAACCATACATTAAGGTCGTCCGTGACCCCATTTTTTGCTCGCATACCTGCCG