Homologs in group_2443

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20070 FBDBKF_20070 85.9 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
EHELCC_03460 EHELCC_03460 85.9 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
NLDBIP_03460 NLDBIP_03460 85.9 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
LHKJJB_09290 LHKJJB_09290 85.9 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
HKOGLL_09685 HKOGLL_09685 85.9 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
PMI_RS10875 PMI_RS10875 42.9 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of the homologs in the orthogroup group_2443

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2443

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P15017 1.7e-05 42 29 0 72 4 None Uncharacterized transcriptional regulator in ATPase CF(0) region Rhodospirillum rubrum
Q8TZX4 2.01e-05 43 35 0 60 3 PF1851 Putative HTH-type transcriptional regulatory protein PF1851 Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P0C5S2 5.43e-05 41 35 0 62 4 R00410 Uncharacterized HTH-type transcriptional regulator R00410 Rhizobium meliloti (strain 1021)
A6U5H5 5.43e-05 41 35 0 62 4 Smed_0045 Uncharacterized HTH-type transcriptional regulator Smed_0045 Sinorhizobium medicae (strain WSM419)
O59472 8.92e-05 42 35 0 60 3 PH1808 Putative HTH-type transcriptional regulatory protein PH1808 Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
Q8ZWT6 0.000604 39 42 0 45 3 PAE1627 Putative HTH-type transcriptional regulatory protein PAE1627 Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2)
P55681 0.000863 38 34 1 70 4 NGR_a01020 Uncharacterized HTH-type transcriptional regulator y4wC Sinorhizobium fredii (strain NBRC 101917 / NGR234)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01690
Feature type CDS
Gene -
Product helix-turn-helix transcriptional regulator
Location 371054 - 371290 (strand: -1)
Length 237 (nucleotides) / 78 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2443
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01381 Helix-turn-helix

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1396 Transcription (K) K Transcriptional regulator, contains XRE-family HTH domain

Protein Sequence

MMNINKIVGKQIRANRKKQGLSGSELGDKLRLSQQQVSRYERGECNIPLDMLFTISLVLEIPFVKLFGDLNKSHELMY

Flanking regions ( +/- flanking 50bp)

CTTATTAGTCATTTTCTATAGAGAAAATTAATAAATTTTGAGTGTTGATCATGATGAATATAAATAAAATTGTTGGAAAACAAATAAGAGCAAACAGAAAAAAACAGGGATTATCCGGTTCAGAACTAGGTGATAAGTTAAGATTAAGTCAACAACAAGTCTCACGTTACGAACGTGGTGAGTGTAATATACCATTGGATATGCTGTTTACCATATCCCTTGTTCTGGAAATACCTTTTGTAAAATTATTTGGCGATCTTAATAAAAGCCATGAATTAATGTATTGATTTTTTTATTTATAAATACACACAACACTAAAAATTGTGTCTGAAGATTA