Orthogroup:group_2443


Homologs in group_2443

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_20070 FBDBKF_20070 Morganella morganii S1 - HTH cro/C1-type domain-containing protein
EHELCC_03460 EHELCC_03460 Morganella morganii S2 - HTH cro/C1-type domain-containing protein
NLDBIP_03460 NLDBIP_03460 Morganella morganii S4 - HTH cro/C1-type domain-containing protein
LHKJJB_09290 LHKJJB_09290 Morganella morganii S3 - HTH cro/C1-type domain-containing protein
HKOGLL_09685 HKOGLL_09685 Morganella morganii S5 - HTH cro/C1-type domain-containing protein
F4V73_RS01690 F4V73_RS01690 Morganella psychrotolerans - helix-turn-helix transcriptional regulator
PMI_RS10875 PMI_RS10875 Proteus mirabilis HI4320 - helix-turn-helix transcriptional regulator

Distribution of group_2443 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_2443 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_2443

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_2443.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 - 7

Product

# Product Occurence
1 HTH cro/C1-type domain-containing protein 5
2 helix-turn-helix transcriptional regulator 2

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG1396 7 K Transcription (K) Transcriptional regulator, contains XRE-family HTH domain

Pfam domain Annotation(s)

Domain ID Occurences Description
PF01381 7 Helix-turn-helix

Annotations of the 13 SwissProt hits

Annotation Number of occurrences
Antitoxin PezA 1
HTH-type transcriptional regulator DicA 1
HTH-type transcriptional regulator PrpR 1
Putative HTH-type transcriptional regulatory protein PAE1627 1
Putative HTH-type transcriptional regulatory protein PF1851 1
Putative HTH-type transcriptional regulatory protein PH1808 1
Putative HTH-type transcriptional regulatory protein PYRAB03670 1
Putative HTH-type transcriptional regulatory protein TK0539 1
Uncharacterized HTH-type transcriptional regulator R00410 1
Uncharacterized HTH-type transcriptional regulator Smed_0045 1
Uncharacterized HTH-type transcriptional regulator y4dJ 1
Uncharacterized HTH-type transcriptional regulator y4wC 1
Uncharacterized transcriptional regulator in ATPase CF(0) region 1

Protein length

Min length 78
Max length 100
Mean length (sd) 81.1 (8.3)
Median length 78.0

Protein length distribution