Homologs in group_6

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21 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_20025 FBDBKF_20025 47.5 Morganella morganii S1 - fimbrial biogenesis usher protein
FBDBKF_20055 FBDBKF_20055 87.7 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
EHELCC_03475 EHELCC_03475 87.7 Morganella morganii S2 fimD Outer membrane usher protein FimD/PapC
EHELCC_03505 EHELCC_03505 47.5 Morganella morganii S2 - fimbrial biogenesis usher protein
NLDBIP_03475 NLDBIP_03475 87.7 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
NLDBIP_03505 NLDBIP_03505 47.5 Morganella morganii S4 - fimbrial biogenesis usher protein
LHKJJB_09305 LHKJJB_09305 87.7 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
LHKJJB_09335 LHKJJB_09335 47.5 Morganella morganii S3 - fimbrial biogenesis usher protein
HKOGLL_09640 HKOGLL_09640 47.5 Morganella morganii S5 - fimbrial biogenesis usher protein
HKOGLL_09670 HKOGLL_09670 87.7 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS00860 F4V73_RS00860 30.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS01045 F4V73_RS01045 48.3 Morganella psychrotolerans - fimbrial biogenesis usher protein
F4V73_RS01860 F4V73_RS01860 32.7 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS06000 F4V73_RS06000 20.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS07390 F4V73_RS07390 30.9 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS08460 F4V73_RS08460 35.4 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS09375 F4V73_RS09375 29.6 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10255 F4V73_RS10255 33.3 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS10900 F4V73_RS10900 42.2 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS12580 F4V73_RS12580 27.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein
F4V73_RS13320 F4V73_RS13320 33.1 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_6

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_6

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P37924 0.0 920 52 5 854 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P77468 0.0 882 50 6 855 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P30130 0.0 750 44 10 863 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
Q8XDD1 0.0 703 43 13 866 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
P75857 0.0 703 44 13 866 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
P46009 0.0 694 43 14 847 3 focD Outer membrane usher protein FocD Escherichia coli
P43662 0.0 584 38 13 858 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P42915 2.12e-162 497 34 12 838 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P33408 3.65e-147 457 35 19 818 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P53517 3.85e-147 458 34 21 878 3 afaC Outer membrane usher protein AfaC Escherichia coli
Q56983 5.99e-142 444 34 21 853 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 5.99e-142 444 34 21 853 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P26949 1.6e-138 435 34 22 840 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P46005 1.39e-130 414 32 20 855 3 aggC Outer membrane usher protein AggC Escherichia coli
P45998 2.9e-124 397 31 19 864 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 2.9e-122 392 32 18 832 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P33397 2.96e-122 392 32 18 832 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
Q8X5K8 9.67e-122 380 39 7 518 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33388 1.72e-119 384 31 20 833 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P21647 5.95e-107 351 30 27 867 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P33129 3.75e-105 347 30 23 849 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P33341 4.71e-98 328 30 20 815 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P46000 4.64e-96 322 30 19 846 3 fasD Outer membrane usher protein FasD Escherichia coli
P33410 1.73e-95 322 30 21 834 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P15484 8.08e-87 300 28 18 756 3 None Outer membrane usher protein CS3-2 Escherichia coli
Q7DBJ9 1.62e-85 281 40 3 368 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P76137 4.29e-82 271 40 3 368 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)
P53512 2.34e-77 271 27 21 819 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 2.1e-76 268 27 21 819 3 cssD Outer membrane usher protein CssD Escherichia coli
P77196 3.07e-74 263 26 19 850 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P75750 5.32e-74 261 28 27 844 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P76655 1.03e-73 261 27 24 839 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P53514 1.02e-72 258 27 24 849 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
Q8X5K7 6.26e-71 241 38 7 366 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P07110 3.36e-65 237 27 26 867 1 papC Outer membrane usher protein PapC Escherichia coli
P37868 6.88e-58 216 26 27 853 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P12050 2e-48 187 25 30 777 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 2.86e-35 147 24 24 794 3 faeD Outer membrane usher protein FaeD Escherichia coli
P45420 1.08e-27 124 25 32 782 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01675
Feature type CDS
Gene fimD
Product outer membrane usher protein FimD
Location 366862 - 369450 (strand: -1)
Length 2589 (nucleotides) / 862 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_6
Orthogroup size 22
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MSNIKKVFTYTPVYIAVLAAVAYLLPAGTAGAKPSFNAAFLSDDLSDTDVSDLSRFETGGYQPPGNYLVEVAVNGEFVSSSEISFTEHKNKDGEPVLFPCFSAETIMSFGVTIAKPEELSDQEKQCFPFTQKIPGSEYHFDFQKQRLTISFPQASLSGQARGYISPDKWESGIPALFVNYFASGNNNSDNTSSYYVSLNSGFNLGVWQFRQSSAWNYNKNKSTSSSQWRSLMNYVQRPIIALKSQLVIGDGNSDGNVFDSAGFRGVRMFSVDNMYPDSQQGYAPTVRGMAKTDAKVVIRQNGYVIYQVYVPPGPFIINDLNPATSSGDLQVTVEENDGSTQRYVVPYSTLPVLQREGRVKYDVMAGEFRSGNSNQNTPTFVQATLLAGLSRDVSVYTGTQLADKYKAILVGVGQNIGQFGAFSFDITHANSELADGSRHKGQSLRFLYAKSLNTTGTTFQLLGYRYSTKGFYTLNDVAYKQMSGYEFAPDGEDGDNSKPIIINYHNLLYNKKGRFQVNLSQSFDNYGSLYLSGNQQSYWDKSGKDEWYQAGYSNSWNGMNYSISLSTTKALEIKERDNMISMNISVPFSSFSSGNARSNSAFNNAYATFSATNNSGGRKAYRAGINGTLLEDRNLSYTVSQGHISQQGYNGSAGLDYQGTYGDFGVSYNYDPDQNQLNYRASGALLVHENGVTLGQSLNETTVLVKAPGAAGVSVENYTGVKTDWRGYALVPYASAYRNNRIALNPDSFSDNTEIKNNVQNVVPVSGAIVRASFDTSIGIRALITLTRDGKPIRFGSMVQETGSQINSIVADDGRVYLTGLPLSGKLLVQWGNTPADQCTAPYDFTRQELNGPLLRAALECK

Flanking regions ( +/- flanking 50bp)

GTCTGAAATAAGTCGTTAGTGATTAATTTTTATTCAGGGAATACGGTGAAATGAGTAACATTAAAAAGGTCTTCACTTACACACCGGTTTATATTGCTGTGCTTGCGGCAGTAGCCTATCTTTTGCCTGCGGGAACCGCTGGTGCGAAACCCTCTTTTAATGCCGCCTTTTTATCTGATGACCTCTCTGATACGGATGTATCTGACCTGTCCCGTTTTGAAACCGGCGGTTATCAGCCTCCCGGCAATTATCTGGTTGAAGTAGCGGTTAATGGTGAATTTGTTTCATCATCAGAGATAAGCTTTACCGAACATAAAAATAAAGACGGTGAGCCGGTTTTATTTCCCTGCTTCAGTGCAGAAACAATTATGAGTTTCGGCGTTACTATCGCAAAACCGGAAGAATTAAGCGATCAAGAAAAACAATGCTTTCCGTTTACGCAAAAAATTCCGGGATCGGAATACCATTTCGACTTTCAAAAACAACGTCTGACTATCAGTTTTCCGCAGGCCAGCCTGTCCGGTCAGGCGCGCGGTTATATTTCACCTGATAAGTGGGAGTCCGGTATTCCGGCACTGTTTGTTAATTACTTTGCTTCAGGGAATAATAACTCGGATAACACCAGCAGTTATTATGTCAGTCTTAACTCCGGATTTAACCTCGGTGTCTGGCAATTCCGTCAGTCAAGCGCCTGGAATTACAATAAAAATAAAAGTACCAGCAGCAGCCAGTGGCGCAGTCTGATGAATTATGTCCAGCGGCCGATTATTGCACTGAAAAGCCAACTGGTTATCGGTGATGGTAACTCAGACGGTAATGTGTTTGATTCTGCCGGCTTTCGTGGTGTGCGCATGTTTTCTGTCGATAACATGTACCCGGACAGCCAGCAGGGCTATGCCCCGACGGTTCGCGGAATGGCAAAAACCGATGCAAAAGTGGTTATCCGTCAGAACGGATATGTAATCTATCAGGTCTATGTGCCGCCGGGTCCATTTATTATCAATGACCTGAACCCTGCCACATCCAGCGGTGACTTGCAGGTTACCGTAGAAGAAAATGATGGTTCAACTCAGCGCTATGTTGTGCCTTATTCAACATTGCCGGTTTTACAACGTGAAGGCCGGGTAAAATATGATGTTATGGCCGGTGAATTCCGCAGTGGTAACAGTAATCAGAATACACCGACATTTGTTCAGGCAACATTGCTTGCCGGTTTATCACGTGACGTATCTGTCTATACCGGGACACAGCTTGCGGATAAATATAAAGCGATATTAGTGGGCGTTGGTCAGAACATCGGGCAATTCGGTGCATTTTCATTTGATATTACCCATGCAAACAGTGAATTAGCCGATGGCTCCCGCCATAAGGGTCAGTCATTACGTTTCCTTTATGCAAAATCACTGAATACAACCGGAACAACATTCCAGTTATTAGGTTACCGTTACTCCACCAAAGGTTTTTATACGTTAAATGATGTCGCATATAAACAGATGAGCGGCTATGAATTTGCGCCTGACGGCGAAGACGGTGATAACAGCAAACCTATTATTATTAATTACCATAATCTGCTTTATAACAAAAAAGGTCGCTTCCAGGTCAATCTTTCGCAGTCATTCGATAACTACGGATCACTGTATTTATCCGGCAACCAGCAATCGTACTGGGACAAAAGTGGTAAAGATGAATGGTATCAGGCGGGTTATTCCAACAGCTGGAATGGCATGAATTATTCAATCTCACTGAGTACCACCAAAGCGCTGGAAATTAAAGAGCGCGATAACATGATCTCAATGAATATTTCGGTTCCGTTCTCTTCATTTTCATCCGGAAATGCACGGAGCAACAGTGCCTTTAATAATGCTTACGCCACATTCTCTGCCACTAATAACTCCGGCGGACGAAAAGCGTATCGTGCAGGCATTAACGGAACACTTCTGGAAGACAGAAACCTGAGTTATACCGTTTCGCAGGGGCATATCAGCCAACAGGGATATAACGGCTCAGCCGGTCTGGATTATCAGGGAACATACGGCGATTTCGGGGTCAGTTATAACTACGATCCGGATCAAAACCAGCTGAACTACCGGGCTTCCGGCGCATTACTGGTTCATGAGAACGGGGTCACGTTAGGACAGTCGCTGAATGAAACCACGGTGCTGGTTAAAGCACCCGGTGCCGCCGGTGTTTCTGTCGAAAACTATACCGGGGTGAAAACGGACTGGCGTGGTTACGCTCTTGTGCCTTATGCCTCGGCTTACCGGAACAACCGTATTGCCCTGAATCCGGATTCATTCAGTGACAATACCGAGATTAAAAACAATGTGCAGAATGTCGTGCCGGTCAGTGGTGCCATTGTCCGGGCATCATTTGATACCAGTATCGGTATCCGCGCACTCATCACGCTGACCCGTGACGGCAAGCCTATCCGCTTCGGTAGTATGGTGCAGGAAACCGGCTCGCAGATAAACAGCATCGTCGCTGATGACGGGCGCGTGTATCTGACCGGTCTGCCGCTGAGCGGAAAACTTCTTGTGCAATGGGGAAATACCCCGGCTGACCAATGTACTGCGCCTTATGACTTTACCCGTCAGGAATTAAACGGGCCGTTACTCCGTGCAGCGCTTGAATGTAAATAGAGAGTTAATGATGAAAAAAATATACTGGGCTCCGTTATTAATGACATTTT