Homologs in group_79

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12 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS03735 PMI_RS03735 86.2 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS04860 PMI_RS04860 87.7 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS12365 PMI_RS12365 87.0 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS14780 PMI_RS14780 87.0 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS15010 PMI_RS15010 87.7 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS15050 PMI_RS15050 86.2 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS15215 PMI_RS15215 87.7 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS16435 PMI_RS16435 84.8 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS16830 PMI_RS16830 87.0 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS17425 PMI_RS17425 84.8 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS17615 PMI_RS17615 87.0 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase
PMI_RS18465 PMI_RS18465 86.2 Proteus mirabilis HI4320 tnpA IS200/IS605 family transposase

Distribution of the homologs in the orthogroup group_79

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_79

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q7DF83 6.25e-18 77 30 1 129 1 tnpA ISDra2 transposase TnpA Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / CCUG 27074 / LMG 4051 / NBRC 15346 / NCIMB 9279 / VKM B-1422 / R1)
P59696 2.35e-12 63 28 2 129 3 tnpA1 Transposase for insertion sequence element IS200 Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P59697 2.35e-12 63 28 2 129 3 tnpA1 Transposase for insertion sequence element IS200 Salmonella typhi

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01565
Feature type CDS
Gene tnpA
Product IS200/IS605 family transposase
Location 349544 - 349960 (strand: -1)
Length 417 (nucleotides) / 138 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_79
Orthogroup size 13
N. genomes 2

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Genomic region

Domains

PF01797 Transposase IS200 like

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1943 Mobilome: prophages, transposons (X) X REP element-mobilizing transposase RayT

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07491 REP-associated tyrosine transposase - -

Protein Sequence

MKIKTDSRRGRHCVFLIHVHLIFVAKYRRKIFDQDAIERLRGYFASVCADFNVELVEMDGEQDHVHLLINYPPKLAVSNLVNSLKGVSSRLLRRDRPDIADRYYYKGVLWSPSYFAASCGGAPLSIIKQYIEQQETPA

Flanking regions ( +/- flanking 50bp)

GGAATTTAAAGGCTTGTAGTCTTTTCATACTCACAATTATACTTTGGTCTATGAAAATAAAAACCGATAGTCGCCGTGGTAGACATTGTGTTTTCCTGATACACGTTCACTTAATATTTGTCGCAAAATACAGGCGAAAGATATTTGATCAGGATGCAATAGAAAGACTCCGAGGCTATTTTGCCAGTGTGTGTGCTGATTTTAATGTTGAACTCGTTGAGATGGATGGAGAACAAGACCATGTTCACTTGCTAATTAATTACCCGCCAAAATTAGCGGTATCTAATCTGGTTAACAGCCTCAAAGGGGTATCCAGTCGGTTGCTTCGCCGAGATCGCCCTGATATTGCGGATCGTTATTACTACAAGGGTGTTTTATGGAGTCCGAGCTATTTTGCTGCCAGTTGCGGTGGAGCGCCTCTTTCAATAATCAAACAATATATCGAACAACAGGAGACACCTGCCTGATCTTTAAAGCCCTTCGGGCTTTACAGCGTATTTTCGGTAACAGACCGGAA