COG1943


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG1943, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 13 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description REP element-mobilizing transposase RayT
Function(s) descr. Mobilome: prophages, transposons (X)

Occurence in the database

COG1943 is associated with 13 different proteins (see tab "Protein list" and "Profile")
The 13 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_79 F4V73_RS01565 349544 349960 -1 tnpA IS200/IS605 family transposase Morganella psychrotolerans
1 group_79 PMI_RS03735 841469 841885 -1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
2 group_79 PMI_RS04860 1064609 1065025 -1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
3 group_79 PMI_RS12365 2740911 2741327 1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
4 group_79 PMI_RS14780 3277694 3278110 1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
5 group_79 PMI_RS15010 3330719 3331135 1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
6 group_79 PMI_RS15050 3339858 3340274 1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
7 group_79 PMI_RS15215 3377415 3377831 -1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
8 group_79 PMI_RS16435 3625058 3625474 -1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
9 group_79 PMI_RS16830 3706533 3706949 -1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
10 group_79 PMI_RS17425 3825614 3826030 -1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
11 group_79 PMI_RS17615 3865007 3865423 1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320
12 group_79 PMI_RS18465 4054386 4054802 1 tnpA IS200/IS605 family transposase Proteus mirabilis HI4320