Homologs in group_1255

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07315 FBDBKF_07315 82.1 Morganella morganii S1 pqiC membrane integrity-associated transporter subunit PqiC
EHELCC_03655 EHELCC_03655 82.1 Morganella morganii S2 pqiC membrane integrity-associated transporter subunit PqiC
NLDBIP_03655 NLDBIP_03655 82.1 Morganella morganii S4 pqiC membrane integrity-associated transporter subunit PqiC
LHKJJB_09485 LHKJJB_09485 82.1 Morganella morganii S3 pqiC membrane integrity-associated transporter subunit PqiC
HKOGLL_09490 HKOGLL_09490 82.1 Morganella morganii S5 pqiC membrane integrity-associated transporter subunit PqiC
PMI_RS03825 PMI_RS03825 49.5 Proteus mirabilis HI4320 pqiC membrane integrity-associated transporter subunit PqiC

Distribution of the homologs in the orthogroup group_1255

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1255

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AB11 2.99e-50 163 43 2 194 3 pqiC Intermembrane transport lipoprotein PqiC Shigella flexneri
P0AB10 2.99e-50 163 43 2 194 1 pqiC Intermembrane transport lipoprotein PqiC Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01500
Feature type CDS
Gene pqiC
Product membrane integrity-associated transporter subunit PqiC
Location 336276 - 336866 (strand: 1)
Length 591 (nucleotides) / 196 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1255
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03886 ABC-type transport auxiliary lipoprotein component

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3009 Cell wall/membrane/envelope biogenesis (M) M Intermembrane transporter PqiABC lipoprotein subunit PqiC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09857 uncharacterized protein - -

Protein Sequence

MKNLAKALAFLGVFVLAGCSSIPEKQYYQLPSVTSSQTDADQTGYRSSTGDNRAPQLWIQRITLSDVLGNSGIVYQTSDVEYSIGSTNLWAGPLEQQLLDAMTTELSQALPDRLVSVQPLEMKPDTLTISVTGFHGRYDGKVIVAGSWIYTHGESVIRHPFNLVLTQSENGYPELVRTLGEGWAQVAKSVAAEIRK

Flanking regions ( +/- flanking 50bp)

TGAAGCGAAGCCGCAATCTGATCCTCAACCTAAGAAGGGGAAGAATTAAGATGAAAAACCTGGCGAAAGCTCTGGCATTTCTGGGTGTTTTTGTACTGGCGGGATGCAGCAGCATCCCTGAAAAACAGTATTATCAGTTGCCCTCTGTTACCTCATCTCAAACAGATGCGGATCAGACCGGTTACCGGAGCAGTACCGGTGATAACCGTGCTCCACAACTGTGGATCCAGCGCATCACACTGAGTGATGTGCTGGGCAATTCCGGCATCGTTTATCAGACCAGTGATGTGGAATACAGCATCGGCAGCACAAATTTATGGGCAGGACCGCTGGAGCAGCAGTTACTGGATGCCATGACCACAGAACTCAGTCAGGCATTGCCGGACAGACTGGTTTCTGTGCAGCCGCTGGAAATGAAGCCGGATACACTGACTATCAGTGTGACCGGTTTCCACGGACGCTATGACGGTAAAGTGATTGTGGCGGGCAGCTGGATTTATACTCATGGCGAAAGTGTTATCCGTCATCCGTTTAACCTTGTTCTGACACAAAGTGAGAACGGGTATCCTGAACTGGTCCGTACCCTCGGTGAGGGATGGGCGCAGGTGGCGAAATCGGTCGCAGCCGAGATACGTAAGTAATCCGCAAACTGCCCTCTGTGGTGTACAAACAGAGGGCAGTTTATTATCAA