COG3009


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG3009, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 8 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Intermembrane transporter PqiABC lipoprotein subunit PqiC
Function(s) descr. Cell wall/membrane/envelope biogenesis (M)

Occurence in the database

COG3009 is associated with 8 different proteins (see tab "Protein list" and "Profile")
The 8 proteins are classified into 2 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1255 FBDBKF_07315 147830 148417 1 pqiC membrane integrity-associated transporter subunit PqiC Morganella morganii S1
1 group_1255 EHELCC_03655 37769 38356 -1 pqiC membrane integrity-associated transporter subunit PqiC Morganella morganii S2
2 group_1255 NLDBIP_03655 37565 38152 -1 pqiC membrane integrity-associated transporter subunit PqiC Morganella morganii S4
3 group_1255 LHKJJB_09485 37679 38266 -1 pqiC membrane integrity-associated transporter subunit PqiC Morganella morganii S3
4 group_1255 HKOGLL_09490 152786 153373 1 pqiC membrane integrity-associated transporter subunit PqiC Morganella morganii S5
5 group_1255 F4V73_RS01500 336276 336866 1 pqiC membrane integrity-associated transporter subunit PqiC Morganella psychrotolerans
6 group_4140 F4V73_RS11930 542574 542954 1 hypothetical protein Morganella psychrotolerans
7 group_1255 PMI_RS03825 867957 868529 1 pqiC membrane integrity-associated transporter subunit PqiC Proteus mirabilis HI4320