Homologs in group_1225

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07140 FBDBKF_07140 89.5 Morganella morganii S1 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
EHELCC_03830 EHELCC_03830 89.5 Morganella morganii S2 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
NLDBIP_03830 NLDBIP_03830 89.5 Morganella morganii S4 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
LHKJJB_09660 LHKJJB_09660 89.5 Morganella morganii S3 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
HKOGLL_09315 HKOGLL_09315 89.5 Morganella morganii S5 ycaO 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
PMI_RS03480 PMI_RS03480 75.9 Proteus mirabilis HI4320 - 30S ribosomal protein S12 methylthiotransferase accessory protein YcaO

Distribution of the homologs in the orthogroup group_1225

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1225

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P75838 0 942 77 0 583 1 ycaO Ribosomal protein S12 methylthiotransferase accessory factor YcaO Escherichia coli (strain K12)
P44144 0 765 65 3 585 4 HI_1265 Uncharacterized protein HI_1265 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01325
Feature type CDS
Gene ycaO
Product 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO
Location 286341 - 288128 (strand: -1)
Length 1788 (nucleotides) / 595 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1225
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding
PF18381 YcaO cyclodehydratase C-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG1944 Translation, ribosomal structure and biogenesis (J) J Ribosomal protein S12 methylthiotransferase accessory factor YcaO

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K09136 ribosomal protein S12 methylthiotransferase accessory factor - -

Protein Sequence

MTQTETHTFIPGKDAALEDSISRFQLKLQQLGFNIEEASWLNPVPNVWSVHIRDTDCPLCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGEQIANSEFVHYPNEKWFPLTDDDSLPEGILDTYLRDYYDPDSDLQGGQLVDLQSSNDTRGICALPFTRQSDGKTIYIPMNIVANLYVSNGMSAGNTRNEARVQGLSEIFERYVKNRIITERISLPAIPQEILARYPQVVESVSTLENEGFPIFCFDASLGGQYPVICVVLFNPANGTCFASFGAHPDFGVALERTVTELLQGRGLKDLDVFTAPTFDDEEVGDQTNLETHFIDSSGLISWDLFKQDADYDFADWQFSGTTEEEFATLMDIFRSVGHDVYIADYEHLGVYACRILVPGMSDIYPVDDLHMANNAMGIHLRETFLALPESNWQPDDYLSLLAQLDEEGHDDYTRVRELLGIATGKDNGWSTLRIGELKSMLALAGGNTDLALVWVEWTQDFNSGGLSAARSNYYRCLHTLLLLTQEPERDTAQYLPAFARMYGQETLDAALNAMHGKNCFYGLCASDNNLTAFTAHKSLLAAYEKLQKAKSHFWLNNKNTN

Flanking regions ( +/- flanking 50bp)

TATTCCGTGCGTCCGCTACCGGCGGGCCACTAACCCAGATTGTGGATCCCATGACACAAACAGAAACGCATACCTTTATTCCCGGCAAAGATGCCGCGCTCGAAGACTCCATCAGCCGTTTTCAGCTGAAATTACAGCAACTCGGTTTTAATATTGAAGAAGCGTCCTGGCTTAATCCTGTTCCGAATGTCTGGTCAGTGCATATCCGCGATACTGATTGCCCGCTCTGTTTTACCAACGGAAAAGGTGCCACAAAAAAAGCGGCACTGGCTTCTGCACTGGGTGAATACTTTGAGCGCCTGTCCACAAACTATTTCTTTGCCGATTTCTGGCTCGGTGAACAGATTGCAAACAGTGAATTTGTACATTATCCGAATGAAAAATGGTTTCCGCTGACAGATGACGATTCCCTGCCCGAAGGTATCCTTGATACATACCTGCGTGATTATTACGATCCGGACAGTGACTTACAGGGCGGTCAGTTGGTCGATCTGCAATCCTCCAATGACACGCGCGGGATCTGCGCACTGCCGTTTACCCGCCAGTCTGACGGGAAAACCATTTATATCCCGATGAATATTGTGGCAAACCTGTATGTCTCCAACGGGATGTCCGCCGGGAATACCCGCAATGAAGCGCGGGTGCAGGGATTGTCTGAAATCTTTGAGCGCTATGTTAAAAACCGCATTATTACGGAGCGCATCAGTTTACCGGCTATCCCGCAAGAGATTCTCGCACGCTACCCGCAGGTTGTTGAGTCCGTCAGTACCCTGGAAAACGAAGGCTTCCCGATTTTCTGTTTCGACGCATCTCTCGGCGGTCAGTATCCGGTCATTTGTGTGGTTCTGTTCAATCCGGCGAACGGCACCTGTTTTGCCTCTTTCGGTGCGCATCCGGACTTTGGCGTTGCACTGGAGCGGACAGTCACCGAGCTGTTGCAGGGACGCGGGCTGAAAGACCTGGATGTCTTTACCGCACCGACCTTTGATGATGAAGAAGTGGGCGATCAGACTAACCTGGAAACCCATTTTATCGACTCCAGCGGTCTTATCAGCTGGGATCTGTTTAAGCAGGATGCAGATTACGATTTCGCTGACTGGCAGTTTTCCGGCACCACCGAAGAAGAATTTGCCACACTGATGGATATTTTCCGCTCTGTCGGTCACGACGTATATATCGCCGATTATGAACATCTGGGTGTATATGCCTGCCGCATTCTTGTGCCGGGCATGTCTGATATTTATCCGGTCGACGATTTGCACATGGCAAACAATGCGATGGGTATCCATTTACGTGAAACCTTCTTGGCACTGCCGGAAAGCAACTGGCAGCCGGATGACTATCTCTCTTTACTGGCGCAACTAGATGAAGAAGGACACGATGATTATACCCGCGTCCGTGAATTACTGGGTATTGCCACCGGTAAAGATAACGGCTGGTCAACTCTGCGCATTGGTGAGCTGAAGTCGATGCTCGCACTGGCAGGCGGTAATACGGATCTGGCGCTGGTCTGGGTTGAATGGACTCAGGATTTCAATTCCGGCGGTCTGAGTGCGGCACGCAGCAATTATTACCGTTGTCTGCATACTCTGCTGCTGTTAACACAGGAGCCTGAGCGTGATACTGCACAGTATTTACCGGCTTTTGCCAGGATGTATGGTCAGGAAACACTGGATGCTGCGTTAAATGCCATGCACGGAAAAAATTGTTTTTATGGTTTGTGTGCATCAGATAATAATTTAACCGCATTTACAGCGCATAAATCTCTGTTAGCGGCTTATGAAAAACTGCAAAAAGCGAAATCGCATTTTTGGCTAAATAACAAAAATACGAATTAATCATCATAAATGGAATGAATCGTAAATATTAGGTTAATTTGTTCGTTTTA