Homologs in group_1224

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07135 FBDBKF_07135 90.6 Morganella morganii S1 focA formate transporter FocA
EHELCC_03835 EHELCC_03835 90.6 Morganella morganii S2 focA formate transporter FocA
NLDBIP_03835 NLDBIP_03835 90.6 Morganella morganii S4 focA formate transporter FocA
LHKJJB_09665 LHKJJB_09665 90.6 Morganella morganii S3 focA formate transporter FocA
HKOGLL_09310 HKOGLL_09310 90.6 Morganella morganii S5 focA formate transporter FocA
PMI_RS03475 PMI_RS03475 77.5 Proteus mirabilis HI4320 focA formate transporter FocA

Distribution of the homologs in the orthogroup group_1224

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1224

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC23 5.53e-149 421 70 1 286 1 focA Formate channel FocA Escherichia coli (strain K12)
P0AC24 5.53e-149 421 70 1 286 3 focA Formate channel FocA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AC25 5.53e-149 421 70 1 286 1 focA Formate channel FocA Escherichia coli O157:H7
P43756 2.47e-103 305 53 1 264 3 focA Formate channel FocA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77733 1.1e-91 276 47 1 283 1 focB Formate channel FocB Escherichia coli (strain K12)
O05399 9.43e-32 121 33 10 283 3 yrhG Uncharacterized transporter YrhG Bacillus subtilis (strain 168)
Q50568 9.56e-32 121 34 9 288 3 fdhC Probable formate transporter Methanothermobacter thermautotrophicus
P35839 1.01e-30 119 32 5 290 3 fdhC Probable formate transporter Methanobacterium formicicum
P38750 1.8e-18 88 24 6 279 1 YHL008C Uncharacterized transporter YHL008C Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P25926 2.14e-18 85 30 10 261 3 nirC Nitrite transporter NirC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P0AC27 7.57e-18 84 31 10 253 3 nirC Nitrite transporter NirC Shigella flexneri
P0AC26 7.57e-18 84 31 10 253 1 nirC Nitrite transporter NirC Escherichia coli (strain K12)
P39608 5.08e-17 82 26 6 253 3 ywcJ Uncharacterized transporter YwcJ Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01320
Feature type CDS
Gene focA
Product formate transporter FocA
Location 285175 - 286035 (strand: -1)
Length 861 (nucleotides) / 286 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1224
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF01226 Formate/nitrite transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2116 Inorganic ion transport and metabolism (P) P Formate/nitrite transporter FocA, FNT family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06212 formate transporter - -

Protein Sequence

MKTDTLFNLLSPAEMAHVADDVGVYKATKAPSITYLSAFMAGIFISVGFVFYITTTTGTAGVIPFGVAKFLGGLCFALGLMLVVVCGADLFTSTVLTIVAKATGRITWGQMFANWTRVYFGNLLGALFFVALIWFAGQHMAANGLWGLNVLQTADHKLHHTFIEAVCLGILANLMVCLAVWMSYAGRSLTDKILVLLFPIGMFVASGFEHSIANMFMIPLGIVIKNFAPSEFWSMVGSSPEQFPSLTISDFVIDNLIPVTIGNIIGGAILVGLTYWLIHLRGEQKH

Flanking regions ( +/- flanking 50bp)

TACTATCATTGCGTGCTATAATTATTGGAATCAAAGAGACAGTTAGCATTATGAAAACTGATACCCTTTTTAATTTATTATCTCCTGCCGAAATGGCACATGTTGCAGACGACGTCGGTGTCTACAAAGCAACCAAAGCACCGTCCATCACTTATTTATCTGCATTTATGGCAGGCATTTTCATCTCAGTTGGTTTCGTCTTCTATATTACCACCACGACCGGAACGGCGGGTGTTATCCCCTTCGGTGTCGCAAAATTTCTTGGTGGTCTTTGTTTCGCACTTGGTCTGATGCTGGTTGTCGTTTGTGGTGCTGACTTATTTACCTCAACCGTACTGACCATCGTCGCAAAAGCAACCGGCCGCATAACATGGGGTCAGATGTTTGCTAACTGGACCCGGGTGTATTTCGGCAACCTGCTTGGTGCCCTCTTTTTCGTCGCGCTCATCTGGTTTGCCGGGCAGCATATGGCAGCTAACGGGCTGTGGGGATTGAATGTCCTGCAAACAGCAGATCACAAGCTTCATCACACATTTATTGAAGCTGTCTGTCTCGGGATTCTGGCAAACTTAATGGTTTGTCTGGCGGTATGGATGAGCTACGCAGGCCGTAGTCTGACCGATAAAATTTTGGTACTTCTGTTCCCTATCGGTATGTTTGTTGCCAGCGGGTTTGAGCATAGTATCGCCAATATGTTTATGATCCCTTTAGGGATTGTCATCAAAAATTTTGCACCTTCTGAATTCTGGTCTATGGTTGGTTCGTCGCCGGAACAGTTTCCGTCACTGACTATCTCTGATTTTGTCATTGATAATCTGATTCCGGTTACTATCGGTAACATCATTGGTGGTGCAATTTTAGTAGGTCTGACTTATTGGCTGATTCATTTACGCGGTGAGCAAAAACATTAGTCTCTGCTTATCACGACTGAATTTCTAAGTTCCATTGTTAAAAGGTAAAG