COG2116


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2116, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Formate/nitrite transporter FocA, FNT family
Function(s) descr. Inorganic ion transport and metabolism (P)

Occurence in the database

COG2116 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1224 FBDBKF_07135 97441 98301 -1 focA formate transporter FocA Morganella morganii S1
1 group_1224 EHELCC_03835 87885 88745 1 focA formate transporter FocA Morganella morganii S2
2 group_1224 NLDBIP_03835 87681 88541 1 focA formate transporter FocA Morganella morganii S4
3 group_1224 LHKJJB_09665 87795 88655 1 focA formate transporter FocA Morganella morganii S3
4 group_1224 HKOGLL_09310 102397 103257 -1 focA formate transporter FocA Morganella morganii S5
5 group_1224 F4V73_RS01320 285175 286035 -1 focA formate transporter FocA Morganella psychrotolerans
6 group_1224 PMI_RS03475 772405 773259 -1 focA formate transporter FocA Proteus mirabilis HI4320