Homologs in group_1283

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07135 FBDBKF_07135 100.0 Morganella morganii S1 focA formate transporter FocA
EHELCC_03835 EHELCC_03835 100.0 Morganella morganii S2 focA formate transporter FocA
NLDBIP_03835 NLDBIP_03835 100.0 Morganella morganii S4 focA formate transporter FocA
HKOGLL_09310 HKOGLL_09310 100.0 Morganella morganii S5 focA formate transporter FocA
F4V73_RS01320 F4V73_RS01320 90.6 Morganella psychrotolerans focA formate transporter FocA
PMI_RS03475 PMI_RS03475 79.6 Proteus mirabilis HI4320 focA formate transporter FocA

Distribution of the homologs in the orthogroup group_1283

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1283

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AC23 3.1e-150 424 72 1 286 1 focA Formate channel FocA Escherichia coli (strain K12)
P0AC24 3.1e-150 424 72 1 286 3 focA Formate channel FocA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AC25 3.1e-150 424 72 1 286 1 focA Formate channel FocA Escherichia coli O157:H7
P43756 4.18e-102 302 53 1 264 3 focA Formate channel FocA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P77733 1.69e-92 278 47 1 283 1 focB Formate channel FocB Escherichia coli (strain K12)
P35839 4.12e-34 128 34 8 298 3 fdhC Probable formate transporter Methanobacterium formicicum
Q50568 2.53e-33 125 34 9 288 3 fdhC Probable formate transporter Methanothermobacter thermautotrophicus
O05399 1.93e-31 120 33 10 283 3 yrhG Uncharacterized transporter YrhG Bacillus subtilis (strain 168)
P0AC27 6.29e-20 90 30 10 255 3 nirC Nitrite transporter NirC Shigella flexneri
P0AC26 6.29e-20 90 30 10 255 1 nirC Nitrite transporter NirC Escherichia coli (strain K12)
P25926 1.08e-19 89 31 11 257 3 nirC Nitrite transporter NirC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P39608 6.11e-19 87 28 10 273 3 ywcJ Uncharacterized transporter YwcJ Bacillus subtilis (strain 168)
P38750 2.3e-18 88 25 5 276 1 YHL008C Uncharacterized transporter YHL008C Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

  • Number of RefSeq hits:

General

Source Morganella morganii S3
Locus tag LHKJJB_09665
Feature type CDS
Gene focA
Product formate transporter FocA
Location 87795 - 88655 (strand: 1)
Length 861 (nucleotides) / 286 (amino acids)
In genomic island -

Contig

Accession ZDB_366
Length 191897 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1283
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF01226 Formate/nitrite transporter

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2116 Inorganic ion transport and metabolism (P) P Formate/nitrite transporter FocA, FNT family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K06212 formate transporter - -

Protein Sequence

MKTDALFNLLSPADMAHVADDVGVYKATKAPHITYLSAFMAGIFISVGFVFYITATTGTAGIVPFGIAKLIGGLCFSLGLMLVVVCGADLFTSTVLTSVAKATGRITWGQMFANWTRVYFGNLVGALFFVALIWYAGQYMAADGLWGLNILQTADHKLHHTFIEAVCLGILANLMVCLAVWMSYAGRSLTDKLLALVLPIGMFVASGFEHSIANMFMIPMGIAIKNFAPSEFWTMVGSSPEQFPSLTVSDFVINNLIPVTIGNIIGGAVLVGLTYWLIHLRGDQKH

Flanking regions ( +/- flanking 50bp)

TACTATCATTGCGTGCTATAATTATTTGGAATCAAGAGACAGTTAGCATTATGAAAACTGACGCACTTTTTAATTTATTATCTCCTGCCGATATGGCACATGTTGCAGACGATGTGGGTGTCTATAAAGCAACGAAAGCCCCTCACATCACATACTTATCTGCATTTATGGCAGGAATATTCATCTCAGTAGGTTTTGTCTTTTATATTACAGCCACCACCGGTACCGCAGGCATAGTGCCTTTTGGTATCGCTAAACTTATCGGTGGTTTATGTTTCTCGCTCGGTCTGATGCTGGTTGTGGTTTGCGGGGCTGACTTATTCACCTCCACCGTATTAACCAGCGTGGCAAAAGCCACCGGGCGTATCACCTGGGGACAGATGTTTGCAAACTGGACCCGCGTGTATTTCGGTAACCTGGTCGGCGCCCTCTTCTTTGTCGCCCTCATCTGGTACGCCGGACAGTATATGGCAGCCGACGGGCTGTGGGGATTAAATATCCTGCAAACAGCGGATCATAAGCTTCATCACACCTTTATTGAAGCCGTCTGTCTCGGGATTCTGGCAAACTTAATGGTTTGTCTGGCGGTATGGATGAGCTACGCAGGCCGTAGTCTGACCGATAAACTTTTAGCTTTAGTCTTACCTATCGGTATGTTTGTTGCCAGCGGATTTGAGCACAGTATCGCCAATATGTTTATGATCCCGATGGGGATTGCGATTAAAAATTTTGCACCTTCTGAATTCTGGACTATGGTTGGTTCGTCGCCTGAACAGTTTCCGTCCCTGACAGTTTCTGATTTCGTGATTAACAACCTGATTCCGGTCACCATCGGCAACATTATTGGTGGTGCAGTTTTAGTAGGTCTGACTTATTGGCTGATTCATTTACGCGGTGACCAGAAGCATTAATCTCTGTTTATCACGACTGAATTTCTAAGTTCCATTGTTAAAAGGTAAAG