Homologs in group_2713

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06855 FBDBKF_06855 92.4 Morganella morganii S1 ribC Riboflavin synthase alpha chain
EHELCC_04115 EHELCC_04115 92.4 Morganella morganii S2 ribC Riboflavin synthase alpha chain
NLDBIP_04115 NLDBIP_04115 92.4 Morganella morganii S4 ribC Riboflavin synthase alpha chain
LHKJJB_09945 LHKJJB_09945 92.4 Morganella morganii S3 ribC Riboflavin synthase alpha chain
HKOGLL_09030 HKOGLL_09030 92.4 Morganella morganii S5 ribC Riboflavin synthase alpha chain

Distribution of the homologs in the orthogroup group_2713

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2713

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFU9 2.42e-23 91 48 0 88 3 ribE Riboflavin synthase Shigella flexneri
P0AFU8 2.42e-23 91 48 0 88 1 ribC Riboflavin synthase Escherichia coli (strain K12)
P57212 5.95e-18 77 45 0 86 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
Q8KA22 1.69e-17 76 47 0 86 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P45273 9.46e-15 68 44 0 86 3 ribE Riboflavin synthase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
O67604 8.38e-11 58 52 0 57 3 ribE Riboflavin synthase Aquifex aeolicus (strain VF5)
Q89AX1 4.08e-10 57 34 0 86 3 ribE Riboflavin synthase Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P21578 4.83e-08 51 34 1 85 1 luxY Yellow fluorescent protein Aliivibrio fischeri
P80893 1.2e-07 50 46 1 63 1 Y1-BFP Blue fluorescence protein Aliivibrio fischeri
P50854 2.86e-06 46 27 1 86 3 ribE Riboflavin synthase Actinobacillus pleuropneumoniae
P25082 3.56e-06 46 31 1 85 1 luxL Lumazine protein Photobacterium phosphoreum
P25082 0.000528 40 28 0 88 1 luxL Lumazine protein Photobacterium phosphoreum
A5DB51 7.07e-06 45 30 2 94 2 RIB5 Riboflavin synthase Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324)
Q9Y7P0 7.31e-06 45 31 0 86 1 rib5 Riboflavin synthase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q2YN92 8.18e-05 42 31 0 82 1 ribE Riboflavin synthase Brucella abortus (strain 2308)
P16440 0.000102 42 28 1 87 1 ribE Riboflavin synthase Bacillus subtilis (strain 168)
Q06877 0.000114 42 31 1 85 1 lumP Lumazine protein Photobacterium leiognathi
Q06877 0.000267 40 28 0 84 1 lumP Lumazine protein Photobacterium leiognathi
Q44680 0.000196 41 29 1 86 3 ribE Riboflavin synthase Bacillus amyloliquefaciens
Q9Z820 0.000208 41 31 2 86 3 ribE Riboflavin synthase Chlamydia pneumoniae

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS01005
Feature type CDS
Gene -
Product riboflavin synthase
Location 215061 - 215339 (strand: 1)
Length 279 (nucleotides) / 92 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2713
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00677 Lumazine binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0307 Coenzyme transport and metabolism (H) H Riboflavin synthase alpha chain

Kegg Ortholog Annotation(s)

Protein Sequence

MDKIFTGVVAGTALILKIEENNDHLIHIVQFPEDLLPGLIIGDSVSYNGCCLTVAAIDNSHVGFYLFTDTLLKTALGRLVTGDYVNIERVAV

Flanking regions ( +/- flanking 50bp)

GGGGTGATCCTGTGCGGTTTTTTTTATCAATACGGATTATGAGGTTGGCTTTGGATAAGATATTTACCGGAGTTGTTGCGGGCACCGCGCTGATTTTAAAAATTGAAGAAAACAATGATCATCTGATTCATATTGTTCAGTTTCCGGAGGATTTACTTCCCGGCTTAATCATCGGTGATTCCGTGTCTTATAACGGCTGTTGCCTGACGGTGGCGGCGATTGATAACAGCCATGTCGGTTTTTATCTCTTTACCGATACATTGCTGAAAACCGCGCTCGGCCGGTTAGTGACCGGGGATTATGTCAATATTGAAAGAGTGGCGGTATAGAAAGAGTGGCAGTACAAAAAGAGTGCAGTACAGAAAGAGTTGCAGTACAG