Homologs in group_1181

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_06810 FBDBKF_06810 85.7 Morganella morganii S1 cdd cytidine deaminase
EHELCC_04160 EHELCC_04160 85.7 Morganella morganii S2 cdd cytidine deaminase
NLDBIP_04160 NLDBIP_04160 85.7 Morganella morganii S4 cdd cytidine deaminase
LHKJJB_09990 LHKJJB_09990 85.7 Morganella morganii S3 cdd cytidine deaminase
HKOGLL_08985 HKOGLL_08985 85.7 Morganella morganii S5 cdd cytidine deaminase
PMI_RS03170 PMI_RS03170 59.9 Proteus mirabilis HI4320 cdd cytidine deaminase

Distribution of the homologs in the orthogroup group_1181

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1181

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q2NUD2 1.05e-117 343 58 1 302 3 cdd Cytidine deaminase Sodalis glossinidius (strain morsitans)
B1JPZ5 8.81e-116 338 59 0 294 3 cdd Cytidine deaminase Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
A4TKN7 8.81e-116 338 59 0 294 3 cdd Cytidine deaminase Yersinia pestis (strain Pestoides F)
Q1CGT5 8.81e-116 338 59 0 294 3 cdd Cytidine deaminase Yersinia pestis bv. Antiqua (strain Nepal516)
A9R1B9 8.81e-116 338 59 0 294 3 cdd Cytidine deaminase Yersinia pestis bv. Antiqua (strain Angola)
Q8ZG08 8.81e-116 338 59 0 294 3 cdd Cytidine deaminase Yersinia pestis
Q1C9U7 8.81e-116 338 59 0 294 3 cdd Cytidine deaminase Yersinia pestis bv. Antiqua (strain Antiqua)
A7FJK3 8.81e-116 338 59 0 294 3 cdd Cytidine deaminase Yersinia pseudotuberculosis serotype O:1b (strain IP 31758)
Q66C79 8.93e-115 335 59 0 294 3 cdd Cytidine deaminase Yersinia pseudotuberculosis serotype I (strain IP32953)
B2JZJ6 8.93e-115 335 59 0 294 3 cdd Cytidine deaminase Yersinia pseudotuberculosis serotype IB (strain PB1/+)
B4ESY3 2.36e-114 334 60 0 289 3 cdd Cytidine deaminase Proteus mirabilis (strain HI4320)
Q7N6K3 3.98e-109 321 58 0 294 3 cdd Cytidine deaminase Photorhabdus laumondii subsp. laumondii (strain DSM 15139 / CIP 105565 / TT01)
A8GC32 8.02e-104 307 56 0 294 3 cdd Cytidine deaminase Serratia proteamaculans (strain 568)
B5FMZ9 1.05e-103 307 57 1 290 3 cdd Cytidine deaminase Salmonella dublin (strain CT_02021853)
B2VIF3 4.91e-103 305 57 1 289 3 cdd Cytidine deaminase Erwinia tasmaniensis (strain DSM 17950 / CFBP 7177 / CIP 109463 / NCPPB 4357 / Et1/99)
Q8Z5A8 4.85e-102 303 57 1 290 3 cdd Cytidine deaminase Salmonella typhi
A4WCI1 5.71e-102 303 57 1 290 3 cdd Cytidine deaminase Enterobacter sp. (strain 638)
B4TNP0 1.61e-101 301 57 1 290 3 cdd Cytidine deaminase Salmonella schwarzengrund (strain CVM19633)
B7NMA8 1.76e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli O7:K1 (strain IAI39 / ExPEC)
B4SY15 1.78e-101 301 57 1 290 3 cdd Cytidine deaminase Salmonella newport (strain SL254)
Q8ZNM0 2.14e-101 301 57 1 290 3 cdd Cytidine deaminase Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
C0Q0V4 2.14e-101 301 57 1 290 3 cdd Cytidine deaminase Salmonella paratyphi C (strain RKS4594)
A9N6L3 2.14e-101 301 57 1 290 3 cdd Cytidine deaminase Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
B4TAK5 2.14e-101 301 57 1 290 3 cdd Cytidine deaminase Salmonella heidelberg (strain SL476)
B5RC22 2.14e-101 301 57 1 290 3 cdd Cytidine deaminase Salmonella gallinarum (strain 287/91 / NCTC 13346)
B5R153 2.14e-101 301 57 1 290 3 cdd Cytidine deaminase Salmonella enteritidis PT4 (strain P125109)
Q1R9T0 2.19e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli (strain UTI89 / UPEC)
B7NCH2 2.19e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC)
Q8FFV3 2.19e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
Q0TFU8 2.19e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli O6:K15:H31 (strain 536 / UPEC)
A1AD04 2.19e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli O1:K1 / APEC
B7MXF5 2.19e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli O81 (strain ED1a)
B7MF55 2.19e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli O45:K1 (strain S88 / ExPEC)
B7UFF9 2.19e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli O127:H6 (strain E2348/69 / EPEC)
Q32EM3 2.38e-101 301 59 1 289 3 cdd Cytidine deaminase Shigella dysenteriae serotype 1 (strain Sd197)
Q57MF5 3.24e-101 301 57 1 290 3 cdd Cytidine deaminase Salmonella choleraesuis (strain SC-B67)
A7ZNW5 3.24e-101 301 59 1 290 3 cdd Cytidine deaminase Escherichia coli O139:H28 (strain E24377A / ETEC)
Q3Z062 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Shigella sonnei (strain Ss046)
P0ABF7 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Shigella flexneri
Q0T2Y0 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Shigella flexneri serotype 5b (strain 8401)
Q322V3 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Shigella boydii serotype 4 (strain Sb227)
B2TVV2 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Shigella boydii serotype 18 (strain CDC 3083-94 / BS512)
B1LKP0 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Escherichia coli (strain SMS-3-5 / SECEC)
B6I8J3 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Escherichia coli (strain SE11)
P0ABF6 4.03e-101 300 59 1 290 1 cdd Cytidine deaminase Escherichia coli (strain K12)
A8A204 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Escherichia coli O9:H4 (strain HS)
B1X7N2 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Escherichia coli (strain K12 / DH10B)
C4ZSM3 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Escherichia coli (strain K12 / MC4100 / BW2952)
B7M4Y8 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Escherichia coli O8 (strain IAI1)
B7LA09 4.03e-101 300 59 1 290 3 cdd Cytidine deaminase Escherichia coli (strain 55989 / EAEC)
Q6D3B4 1.11e-100 300 56 0 290 3 cdd Cytidine deaminase Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)
B5EYN3 1.31e-100 299 57 1 290 3 cdd Cytidine deaminase Salmonella agona (strain SL483)
C5BCM4 2.14e-100 299 58 2 291 3 cdd Cytidine deaminase Edwardsiella ictaluri (strain 93-146)
B1IYC6 2.46e-100 298 59 1 289 3 cdd Cytidine deaminase Escherichia coli (strain ATCC 8739 / DSM 1576 / NBRC 3972 / NCIMB 8545 / WDCM 00012 / Crooks)
B5BE52 3.38e-100 298 57 1 290 3 cdd Cytidine deaminase Salmonella paratyphi A (strain AKU_12601)
Q5PE68 3.38e-100 298 57 1 290 3 cdd Cytidine deaminase Salmonella paratyphi A (strain ATCC 9150 / SARB42)
B5YW75 4.2e-100 298 58 1 290 3 cdd Cytidine deaminase Escherichia coli O157:H7 (strain EC4115 / EHEC)
Q8X648 4.2e-100 298 58 1 290 3 cdd Cytidine deaminase Escherichia coli O157:H7
B7LVA3 5.83e-100 298 58 1 290 3 cdd Cytidine deaminase Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CCUG 18766 / IAM 14443 / JCM 21226 / LMG 7866 / NBRC 102419 / NCTC 12128 / CDC 0568-73)
A9MKS5 8.63e-100 297 57 1 290 3 cdd Cytidine deaminase Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
C6DDS7 4.99e-98 293 55 0 290 3 cdd Cytidine deaminase Pectobacterium carotovorum subsp. carotovorum (strain PC1)
B5XP65 2.37e-97 291 56 1 290 3 cdd Cytidine deaminase Klebsiella pneumoniae (strain 342)
A6TBN1 5.79e-97 290 56 1 290 1 cdd Cytidine deaminase Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578)
A8AE87 1.55e-96 289 56 1 290 3 cdd Cytidine deaminase Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
Q7MK48 3.54e-96 288 50 0 284 3 cdd Cytidine deaminase Vibrio vulnificus (strain YJ016)
Q8DA31 8.56e-96 287 50 0 284 3 cdd Cytidine deaminase Vibrio vulnificus (strain CMCP6)
A7MLJ4 2.33e-95 286 56 1 293 3 cdd Cytidine deaminase Cronobacter sakazakii (strain ATCC BAA-894)
B7VPF1 6.15e-92 277 46 0 284 3 cdd Cytidine deaminase Vibrio atlanticus (strain LGP32)
Q87Q52 1.66e-89 271 47 0 284 3 cdd Cytidine deaminase Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
A7MVH6 3.48e-89 270 48 0 284 3 cdd Cytidine deaminase Vibrio campbellii (strain ATCC BAA-1116)
A5F1V7 9.17e-89 269 48 0 284 3 cdd Cytidine deaminase Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
C3LLS7 1.55e-88 268 48 0 284 3 cdd Cytidine deaminase Vibrio cholerae serotype O1 (strain M66-2)
Q9KSM5 1.55e-88 268 48 0 284 1 cdd Cytidine deaminase Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q6LRI0 5.77e-88 267 46 0 284 3 cdd Cytidine deaminase Photobacterium profundum (strain SS9)
Q5E4R6 3.05e-84 258 48 2 291 3 cdd Cytidine deaminase Aliivibrio fischeri (strain ATCC 700601 / ES114)
B5FEN2 6.05e-84 257 48 2 291 3 cdd Cytidine deaminase Aliivibrio fischeri (strain MJ11)
B0USP2 2.08e-83 256 52 0 240 3 cdd Cytidine deaminase Histophilus somni (strain 2336)
Q0I4X6 2.85e-83 255 52 0 240 3 cdd Cytidine deaminase Histophilus somni (strain 129Pt)
A0KJH4 5.59e-82 252 52 3 286 3 cdd Cytidine deaminase Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / DSM 30187 / BCRC 13018 / CCUG 14551 / JCM 1027 / KCTC 2358 / NCIMB 9240 / NCTC 8049)
A4SNI2 1.07e-78 243 50 3 290 3 cdd Cytidine deaminase Aeromonas salmonicida (strain A449)
Q9CP11 2.15e-71 225 48 1 237 3 cdd Cytidine deaminase Pasteurella multocida (strain Pm70)
Q4QK60 2.86e-71 224 46 0 250 3 cdd Cytidine deaminase Haemophilus influenzae (strain 86-028NP)
A5UEI7 3.51e-71 224 46 0 250 3 cdd Cytidine deaminase Haemophilus influenzae (strain PittGG)
P44325 8.54e-71 223 44 1 265 3 cdd Cytidine deaminase Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A5UBV9 1.55e-70 223 46 0 250 3 cdd Cytidine deaminase Haemophilus influenzae (strain PittEE)
B0BQT2 8.14e-70 221 44 2 269 3 cdd Cytidine deaminase Actinobacillus pleuropneumoniae serotype 3 (strain JL03)
B3GYC3 8.14e-70 221 44 2 269 3 cdd Cytidine deaminase Actinobacillus pleuropneumoniae serotype 7 (strain AP76)
A3N1Z1 8.14e-70 221 44 2 269 3 cdd Cytidine deaminase Actinobacillus pleuropneumoniae serotype 5b (strain L20)
A3QDC9 3.33e-69 219 45 2 284 3 cdd Cytidine deaminase Shewanella loihica (strain ATCC BAA-1088 / PV-4)
Q7VMJ6 6.23e-68 216 43 4 286 3 cdd Cytidine deaminase Haemophilus ducreyi (strain 35000HP / ATCC 700724)
Q65RG8 9.16e-68 216 48 2 245 3 cdd Cytidine deaminase Mannheimia succiniciproducens (strain KCTC 0769BP / MBEL55E)
A8FWK2 1.88e-66 212 41 1 290 3 cdd Cytidine deaminase Shewanella sediminis (strain HAW-EB3)
B8CR83 4.04e-66 211 41 2 284 3 cdd Cytidine deaminase Shewanella piezotolerans (strain WP3 / JCM 13877)
Q083S7 4.68e-66 211 40 2 284 3 cdd Cytidine deaminase Shewanella frigidimarina (strain NCIMB 400)
B1KRC5 3.71e-65 209 42 1 290 3 cdd Cytidine deaminase Shewanella woodyi (strain ATCC 51908 / MS32)
A0KYD1 1.34e-63 205 42 2 284 3 cdd Cytidine deaminase Shewanella sp. (strain ANA-3)
B0TQV3 1.67e-63 204 43 1 272 3 cdd Cytidine deaminase Shewanella halifaxensis (strain HAW-EB4)
Q0HHI5 2.09e-63 204 42 2 284 3 cdd Cytidine deaminase Shewanella sp. (strain MR-4)
A8H5H1 2.93e-63 204 42 1 272 3 cdd Cytidine deaminase Shewanella pealeana (strain ATCC 700345 / ANG-SQ1)
Q0HTT9 8.81e-63 203 42 2 284 3 cdd Cytidine deaminase Shewanella sp. (strain MR-7)
A9KXF0 9.61e-63 202 41 2 284 3 cdd Cytidine deaminase Shewanella baltica (strain OS195)
A6WLY5 9.61e-63 202 41 2 284 3 cdd Cytidine deaminase Shewanella baltica (strain OS185)
A3D392 9.61e-63 202 41 2 284 3 cdd Cytidine deaminase Shewanella baltica (strain OS155 / ATCC BAA-1091)
B8EF35 9.61e-63 202 41 2 284 3 cdd Cytidine deaminase Shewanella baltica (strain OS223)
Q8EDG1 7.98e-62 200 42 1 272 3 cdd Cytidine deaminase Shewanella oneidensis (strain ATCC 700550 / JCM 31522 / CIP 106686 / LMG 19005 / NCIMB 14063 / MR-1)
A6VLF5 9.76e-61 197 53 1 214 3 cdd Cytidine deaminase Actinobacillus succinogenes (strain ATCC 55618 / DSM 22257 / CCUG 43843 / 130Z)
A1RL10 6.11e-60 196 41 2 284 3 cdd Cytidine deaminase Shewanella sp. (strain W3-18-1)
A4Y5R0 6.11e-60 196 41 2 284 3 cdd Cytidine deaminase Shewanella putrefaciens (strain CN-32 / ATCC BAA-453)
A1S723 5.34e-59 193 42 3 288 3 cdd Cytidine deaminase Shewanella amazonensis (strain ATCC BAA-1098 / SB2B)
Q3IBX5 3.16e-48 166 41 5 241 3 cdd Cytidine deaminase Pseudoalteromonas translucida (strain TAC 125)
O65896 3.03e-44 155 37 4 267 1 CDA1 Cytidine deaminase 1 Arabidopsis thaliana
Q9SU87 1.21e-42 151 37 7 273 2 CDA7 Cytidine deaminase 7 Arabidopsis thaliana
Q9SU86 2.61e-37 137 38 8 243 3 CDA6 Cytidine deaminase 6 Arabidopsis thaliana
O65571 6.05e-34 129 36 9 283 2 CDA2 Cytidine deaminase 2 Arabidopsis thaliana
Q9S847 2.24e-29 114 36 5 224 2 CDA3 Cytidine deaminase 3 Arabidopsis thaliana
Q9S789 1.56e-23 100 34 9 258 3 CDA9 Probable inactive cytidine deaminase 9 Arabidopsis thaliana
Q9XEX4 6.63e-23 99 33 6 230 3 CDA8 Cytidine deaminase 8 Arabidopsis thaliana
Q9S7L8 6.28e-18 85 32 9 243 3 CDA5 Cytidine deaminase 5 Arabidopsis thaliana
Q9S7S2 1.66e-12 69 30 8 232 2 CDA4 Probable inactive cytidine deaminase 4 Arabidopsis thaliana
P32320 2.6e-11 63 35 3 120 1 CDA Cytidine deaminase Homo sapiens
P56389 1.57e-10 61 34 3 120 1 Cda Cytidine deaminase Mus musculus
Q06549 9.4e-07 50 30 5 143 1 CDD1 Cytidine deaminase Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Q54I82 1.26e-06 50 33 4 113 3 cda Probable cytidine deaminase Dictyostelium discoideum
Q09190 4.57e-06 48 33 4 112 3 pcd1 Putative cytidine deaminase Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9S3M0 4.98e-06 48 32 4 116 3 cdd Cytidine deaminase Sporosarcina psychrophila
P9WPH3 2.78e-05 46 36 5 124 1 cdd Cytidine deaminase Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WPH2 2.78e-05 46 36 5 124 3 cdd Cytidine deaminase Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q9KD53 0.000111 44 31 3 116 3 cdd Cytidine deaminase Halalkalibacterium halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
P19079 0.000269 43 27 4 125 1 cdd Cytidine deaminase Bacillus subtilis (strain 168)
P19079 0.001 42 40 0 44 1 cdd Cytidine deaminase Bacillus subtilis (strain 168)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00950
Feature type CDS
Gene cdd
Product cytidine deaminase
Location 202296 - 203180 (strand: -1)
Length 885 (nucleotides) / 294 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1181
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region
PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0295 Nucleotide transport and metabolism (F) F Cytidine deaminase

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K01489 cytidine deaminase [EC:3.5.4.5] Pyrimidine metabolism
Drug metabolism - other enzymes
Metabolic pathways
Nucleotide metabolism		 -

Protein Sequence

MQNRFHEALKTYSSPLQTLLTDATCSDTFPGYFTAKQVSALCEAGGCDEDALALALLPLAASCAVTPISHFNVGAVAHGLSGNLYLGANMEFCHVPLQQTVHAEQSAVTHAWLRGEKGLRKITVNYTPCGHCRQFMNEMNSGTQLLIQLPDLAATPLGVLLPHAFGPVDLGIKTRLFDQVHHGYRFLATNAVVAKALEAANRSHAPYSQSHSGVALQDSRGRIYSGAYIENAAFNPGLPPLQAALIFMNMAGGDLHDIHRAVLVEGNNSAISQWDCTSATLTALGCGDISLFSY

Flanking regions ( +/- flanking 50bp)

TGTGCCTTATGCCCCGCTAGAATGATCTTATTGATAATGGAGATTATTTTATGCAAAACCGCTTTCATGAAGCCCTGAAAACATACTCTTCCCCGTTACAGACGCTGTTAACTGATGCCACCTGTTCAGATACCTTTCCCGGTTACTTTACGGCGAAACAGGTCAGTGCCCTGTGTGAAGCAGGCGGCTGTGATGAGGATGCACTGGCTCTCGCGCTGCTGCCTCTTGCGGCAAGCTGTGCGGTAACACCGATATCTCATTTCAATGTCGGTGCCGTGGCTCACGGGCTGAGTGGTAATCTGTATTTGGGCGCAAACATGGAATTTTGTCATGTGCCTTTGCAGCAAACTGTTCATGCGGAACAAAGCGCGGTGACTCACGCCTGGCTGCGCGGCGAAAAAGGATTGCGGAAAATCACGGTAAATTACACACCGTGCGGGCACTGCCGCCAGTTTATGAATGAGATGAACAGCGGAACGCAATTACTCATCCAACTGCCGGATCTTGCGGCAACGCCGCTGGGTGTACTGCTGCCCCATGCTTTCGGTCCGGTGGATTTAGGGATTAAAACCAGGCTGTTTGACCAGGTGCATCACGGGTATCGCTTCCTCGCGACCAATGCGGTGGTGGCAAAAGCGCTGGAAGCAGCAAACCGCAGCCATGCGCCTTATTCACAGTCACACAGTGGTGTTGCATTACAGGACAGTCGCGGGCGGATCTACAGCGGGGCTTATATTGAGAATGCCGCGTTTAACCCGGGTCTGCCGCCATTACAGGCAGCACTTATCTTTATGAATATGGCAGGCGGGGATCTGCATGATATCCACCGCGCCGTGCTGGTGGAAGGTAATAATTCTGCAATCTCCCAGTGGGACTGTACCTCTGCCACACTGACCGCACTGGGCTGCGGGGATATTTCACTGTTCAGTTACTGATATATCCATACGGTGATCAGGTTGATACCCATCCTCCCCCGGGTATCAAC