Homologs in group_3692

Help

2 homologs were identified in 1 genome with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
PMI_RS05720 PMI_RS05720 28.2 Proteus mirabilis HI4320 - fimbrial protein
PMI_RS10880 PMI_RS10880 30.3 Proteus mirabilis HI4320 - fimbrial protein

Distribution of the homologs in the orthogroup group_3692

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_3692

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P21648 1.49e-80 251 45 8 336 1 mrkD Fimbria adhesin protein Klebsiella pneumoniae
P43660 1.2e-06 51 31 5 151 3 lpfA Long polar fimbria protein A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8X5K5 8.51e-05 46 28 4 152 2 lpfA Probable major fimbrial subunit LpfA Escherichia coli O157:H7
P37920 0.00064 43 31 8 154 3 fimA Type-1 fimbrial protein, A chain Salmonella typhi

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00855
Feature type CDS
Gene -
Product fimbrial protein
Location 178397 - 179404 (strand: -1)
Length 1008 (nucleotides) / 335 (amino acids)
In genomic island -

Contig

Accession NZ_VXKB01000001
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3692
Orthogroup size 3
N. genomes 2

Actions

Genomic region

Domains

PF00419 Fimbrial protein
PF22003 MrkD-like receptor binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07345 major type 1 subunit fimbrin (pilin) Shigellosis
Pertussis		 -

Protein Sequence

MSIKHHNILYAVLALLFTGSSAYAECIRDDSVPAEMIDMIFGRVVVRPDLSVGSVIKERTWTMPETGKYWARCRGGTTLDALIISPGAEGANKVFSTNIPGIGLRFTRKGQVGMTYPDTYRVPGGADNLQPAYLGGSDFTVEIIKTALKTGSGTIAQGEYTRYGYKPNSGITPAIISFLSAEAITIVSPSCLVTSGNNQDVYLPPVRYTSFSGKGTTVGEKPFFIKLLCSGGIDDKGYSNINITFDADLAPDTETSRGVLKNKLTDNNSAKGVGIQVLDTNNTPLLMKYPYLIGKLASQQEVEYNLNYIARYYQHGNSISPGDVQAKMIFNITYD

Flanking regions ( +/- flanking 50bp)

AATGAAACCTGTACCTTCCCGCTGGATCTCAGCAAAAGGCAGAACACACTATGTCAATAAAACATCATAATATTCTCTACGCCGTACTGGCGCTTCTGTTTACCGGCAGCAGTGCTTATGCCGAATGCATTCGTGATGACAGTGTGCCGGCAGAAATGATTGATATGATTTTTGGCCGGGTTGTTGTCCGCCCGGATCTTTCTGTCGGCTCAGTCATAAAAGAAAGAACATGGACTATGCCGGAGACCGGGAAATATTGGGCGCGCTGCCGGGGGGGAACCACTCTGGATGCGCTGATTATATCTCCGGGTGCTGAGGGAGCGAATAAAGTCTTTTCCACCAATATCCCGGGGATAGGGCTTCGATTTACCCGTAAAGGACAGGTCGGGATGACCTATCCGGATACTTACCGCGTTCCGGGAGGGGCTGACAACTTGCAACCGGCCTACCTGGGAGGCTCTGATTTTACCGTTGAAATCATCAAAACAGCCCTGAAAACAGGCTCGGGGACTATCGCTCAGGGGGAATATACCCGTTATGGCTATAAACCAAACAGTGGCATTACCCCGGCGATTATCAGTTTTCTGAGTGCGGAGGCTATCACCATTGTGTCCCCGTCATGTCTGGTGACCTCAGGAAATAATCAGGATGTCTATCTTCCGCCGGTCAGATACACTTCATTTTCGGGGAAAGGAACAACTGTTGGTGAAAAACCTTTCTTTATTAAGTTGTTATGCAGCGGAGGTATAGATGATAAAGGATACAGTAATATTAATATCACATTTGACGCCGACCTTGCGCCGGACACAGAAACCAGCCGTGGCGTGCTGAAAAATAAACTGACTGATAATAACTCAGCGAAAGGTGTGGGTATCCAGGTACTGGATACAAACAATACTCCGCTGCTCATGAAATACCCTTACCTTATCGGTAAGCTGGCCAGTCAGCAGGAGGTTGAATATAACCTGAACTATATTGCCCGGTATTATCAGCACGGCAATTCCATTTCCCCGGGTGATGTGCAGGCCAAAATGATCTTCAATATTACCTACGATTAATACCACACACCGGATCTCACCGGACAACGGATGTCCGTTTTCTTTCTCTA