Homologs in group_326

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7 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_09805 FBDBKF_09805 97.9 Morganella morganii S1 sucD succinate--CoA ligase subunit alpha
EHELCC_04605 EHELCC_04605 97.9 Morganella morganii S2 sucD succinate--CoA ligase subunit alpha
NLDBIP_04605 NLDBIP_04605 97.9 Morganella morganii S4 sucD succinate--CoA ligase subunit alpha
LHKJJB_14025 LHKJJB_14025 97.9 Morganella morganii S3 sucD succinate--CoA ligase subunit alpha
HKOGLL_12510 HKOGLL_12510 97.9 Morganella morganii S5 sucD succinate--CoA ligase subunit alpha
PMI_RS02815 PMI_RS02815 94.5 Proteus mirabilis HI4320 sucD succinate--CoA ligase subunit alpha
PMI_RS10850 PMI_RS10850 31.7 Proteus mirabilis HI4320 - acyl-CoA synthetase FdrA

Distribution of the homologs in the orthogroup group_326

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_326

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AGE9 0.0 544 94 0 288 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Escherichia coli (strain K12)
P0AGF0 0.0 544 94 0 288 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AGF1 0.0 544 94 0 288 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Escherichia coli O157:H7
Q51567 0.0 514 89 0 284 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P45102 2.32e-174 486 83 0 288 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P53591 1.95e-158 446 76 1 285 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Coxiella burnetii (strain RSA 493 / Nine Mile phase I)
Q1RH56 2.8e-146 415 70 1 290 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia bellii (strain RML369-C)
Q4ULQ8 1.42e-145 413 71 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
O08371 3.59e-144 409 70 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia prowazekii (strain Madrid E)
Q92I22 2.73e-141 402 69 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q9AKE1 3.12e-141 402 68 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q8LAD2 3.18e-134 386 67 2 291 1 At5g23250 Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial Arabidopsis thaliana
P68209 7.95e-134 385 66 2 291 1 At5g08300 Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial Arabidopsis thaliana
Q8GTQ9 8.38e-134 385 66 2 291 1 SCOA Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial Solanum lycopersicum
P80865 2.19e-130 375 62 0 290 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Bacillus subtilis (strain 168)
Q6ZL94 1.22e-129 374 66 2 291 1 Os07g0577700 Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial Oryza sativa subsp. japonica
Q6DQL1 5.34e-128 370 68 2 282 1 None Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial Solanum lycopersicum
P99070 9.02e-128 368 64 0 284 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain N315)
P66866 9.02e-128 368 64 0 284 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain Mu50 / ATCC 700699)
Q5HGI6 9.02e-128 368 64 0 284 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain COL)
Q6GHI9 9.63e-128 368 64 0 284 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain MRSA252)
Q8NX01 9.73e-128 368 64 0 281 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain MW2)
Q6G9W7 9.73e-128 368 64 0 281 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus aureus (strain MSSA476)
B3FHT4 7.96e-125 361 65 2 285 1 SCSa Succinate--CoA ligase [ADP-forming] subunit alpha Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII)
P36967 3.58e-124 360 68 2 285 1 scsA Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Dictyostelium discoideum
Q5HPU4 4e-124 359 62 0 281 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A)
Q8CPH4 7.06e-124 358 61 0 281 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200)
Q9WUM5 1.09e-120 352 67 2 293 1 Suclg1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Mus musculus
P13086 6.98e-120 350 67 2 294 2 Suclg1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Rattus norvegicus
O28098 1.32e-117 342 58 1 288 3 sucD2 Succinate--CoA ligase [ADP-forming] subunit alpha 2 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
Q9YGD2 1.7e-117 342 64 2 294 1 SUCLG1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial (Fragment) Columba livia
P53595 2.41e-116 339 56 1 294 3 mtkB Malate--CoA ligase subunit alpha Methylorubrum extorquens (strain ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1)
O28733 1.95e-115 337 55 1 289 3 sucD1 Succinate--CoA ligase [ADP-forming] subunit alpha 1 Archaeoglobus fulgidus (strain ATCC 49558 / DSM 4304 / JCM 9628 / NBRC 100126 / VC-16)
O13750 2.43e-114 335 61 2 295 3 SPAC16E8.17c Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial Schizosaccharomyces pombe (strain 972 / ATCC 24843)
P53596 8.38e-113 331 61 2 288 3 sucl-1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Caenorhabditis elegans
P53597 1.07e-112 332 66 2 293 1 SUCLG1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Homo sapiens
O67547 1.41e-112 330 61 1 291 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Aquifex aeolicus (strain VF5)
Q9P727 4.69e-112 330 61 2 289 3 tca-8 Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
O19069 7.04e-110 325 66 2 293 1 SUCLG1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Sus scrofa
Q58DR8 8.66e-110 324 67 2 284 2 SUCLG1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Bos taurus
Q94522 4.23e-108 319 60 2 288 2 Scsalpha1 Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial Drosophila melanogaster
O26663 6.91e-105 310 54 2 286 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
Q58643 3.08e-100 298 57 1 288 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
P9WGC7 1.86e-94 284 52 4 299 1 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WGC6 1.86e-94 284 52 4 299 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q7U0Z0 2.27e-94 283 52 4 299 3 sucD Succinate--CoA ligase [ADP-forming] subunit alpha Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P09143 3.58e-94 282 56 0 286 1 sucD Succinate--CoA ligase [GDP-forming] subunit alpha Thermus thermophilus
P53598 8.24e-93 280 52 4 292 1 LSC1 Succinate--CoA ligase [ADP-forming] subunit alpha, mitochondrial Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
P53401 1.7e-89 271 55 3 286 1 ALPHA-SCS3 Succinate--CoA ligase [ADP-forming] subunit alpha-3, mitochondrial Trichomonas vaginalis
P53400 2.43e-89 271 54 3 286 1 ALPHA-SCS2 Succinate--CoA ligase [ADP-forming] subunit alpha-2, mitochondrial Trichomonas vaginalis
P53399 5.45e-89 270 55 3 286 1 ALPHA-SCS1 Succinate--CoA ligase [ADP-forming] subunit alpha-1, mitochondrial Trichomonas vaginalis
A0A3A6N9V6 2.61e-81 250 42 2 291 1 sqwL ADP-forming sulfoacetate-CoA ligase subunit SqwL Acholeplasma sp.
E5Y8P7 1.89e-72 227 41 2 292 1 sauD ADP-forming sulfoacetate-CoA ligase subunit SauD Bilophila wadsworthia (strain 3_1_6)
Q91V92 3.58e-28 117 36 9 262 1 Acly ATP-citrate synthase Mus musculus
P16638 3.65e-28 117 36 9 262 1 Acly ATP-citrate synthase Rattus norvegicus
P53396 7.11e-28 116 35 9 262 1 ACLY ATP-citrate synthase Homo sapiens
Q32PF2 3.54e-26 111 35 9 262 2 ACLY ATP-citrate synthase Bos taurus
Q2TCH3 4.29e-26 111 34 9 262 2 ACLY ATP-citrate synthase Ovis aries
P53585 6.21e-24 105 32 6 256 3 acly-1 Probable ATP-citrate synthase Caenorhabditis elegans
O93988 7.85e-24 104 31 7 263 3 ACL1 ATP-citrate synthase subunit 1 Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
Q8X097 2.13e-23 103 31 7 263 3 B14D6.310 Probable ATP-citrate synthase subunit 1 Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
Q54YA0 6.5e-23 101 31 5 269 1 acly Probable ATP-citrate synthase Dictyostelium discoideum
Q9P7W3 8.09e-22 98 32 7 244 1 SPBC1703.07 Probable ATP-citrate synthase subunit 1 Schizosaccharomyces pombe (strain 972 / ATCC 24843)
Q9C522 2.72e-20 94 33 5 216 2 ACLB-1 ATP-citrate synthase beta chain protein 1 Arabidopsis thaliana
Q9FGX1 1.15e-19 92 34 5 216 1 ACLB-2 ATP-citrate synthase beta chain protein 2 Arabidopsis thaliana
Q93VT8 7.77e-19 89 33 5 216 2 ACLB-1 ATP-citrate synthase beta chain protein 1 Oryza sativa subsp. japonica
A9A1Y1 2.27e-08 58 28 8 182 1 Nmar_0206 4-hydroxybutyrate--CoA ligase [ADP-forming] Nitrosopumilus maritimus (strain SCM1)
E7FI45 5.79e-08 57 26 9 256 1 acdAI Acetate--CoA ligase [ADP-forming] I subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
P77187 5.71e-07 53 28 3 170 4 yahF Uncharacterized protein YahF Escherichia coli (strain K12)
Q8U3D6 2.75e-05 48 25 8 207 1 acdAII Acetate--CoA ligase [ADP-forming] II subunit alpha Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
A9A2G6 0.00063 44 25 5 184 1 Nmar_1309 3-hydroxypropionate--CoA ligase [ADP-forming] Nitrosopumilus maritimus (strain SCM1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00540
Feature type CDS
Gene sucD
Product succinate--CoA ligase subunit alpha
Location 116375 - 117247 (strand: 1)
Length 873 (nucleotides) / 290 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_326
Orthogroup size 8
N. genomes 7

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Genomic region

Domains

PF00549 CoA-ligase
PF02629 CoA binding domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0074 Energy production and conversion (C) C Succinyl-CoA synthetase, alpha subunit

Kegg Ortholog Annotation(s)

Protein Sequence

MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVEATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGQCKIGIMPGHIHLPGKVGIVSRSGTLTYEAVKQTTDAGLGQSTCVGIGGDPIPGSNFIDILRMFQNDPQTEAIVMIGEIGGSAEEEAAAFIKESVTKPVVAYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEAVKAILSK

Flanking regions ( +/- flanking 50bp)

AGCCTGACGGATGCTGCGGAACGTGTTGTTGCAGCAGTGGGAGCGAAATAATGTCTATTTTAATCGATAAAAATACCAAGGTTATCTGTCAGGGATTCACAGGCAGCCAGGGGACTTTCCACTCTGAACAGGCGATTGCCTACGGTACCAAAATGGTCGGTGGTGTGACGCCGGGCAAAGGCGGAACCACACATTTAGGGTTGCCGGTCTTTAATACTGTGCGTGAAGCGGTAGAAGCCACAGGTGCGACCGCATCGGTTATTTATGTCCCTGCACCCTTTTGCAAAGACTCCATTCTGGAAGCCATTGATGCCGGTATTAAGCTGATTATCACTATTACCGAAGGTATCCCGACCCTGGATATGCTGACGGTAAAAGTGAAGCTGGATGAAGCGGGTGTCCGGATGATCGGTCCGAACTGTCCGGGCGTTATTACCCCGGGACAGTGCAAAATCGGGATTATGCCGGGCCATATCCATCTGCCGGGTAAAGTGGGCATTGTGTCCCGTTCCGGTACGCTGACGTATGAAGCGGTGAAACAGACGACGGATGCCGGTCTGGGACAGTCTACCTGTGTGGGTATCGGTGGCGACCCGATTCCGGGATCTAACTTTATTGATATTCTGCGCATGTTCCAGAATGACCCGCAAACAGAAGCGATTGTGATGATCGGTGAAATCGGCGGCAGTGCGGAAGAAGAAGCGGCTGCTTTTATTAAAGAGAGCGTCACAAAGCCGGTTGTGGCATATATTGCGGGTGTGACTGCACCTAAGGGCAAACGAATGGGGCACGCCGGAGCGATTATTGCCGGCGGGAAGGGAACCGCAGATGAAAAATTTGCCGCCCTTGAAGCCGCAGGCGTAAAAACAGTCCGCAGCCTGGCTGATATTGGTGAGGCAGTGAAAGCTATCCTCAGCAAGTAGCTGTGTATCAATTGTGTATCAATTGCGTATCTGACTGCTTGCTATACCCG