Homologs in group_1556

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10080 FBDBKF_10080 94.4 Morganella morganii S1 mrdA peptidoglycan DD-transpeptidase MrdA
EHELCC_04880 EHELCC_04880 94.4 Morganella morganii S2 mrdA peptidoglycan DD-transpeptidase MrdA
NLDBIP_04880 NLDBIP_04880 94.4 Morganella morganii S4 mrdA peptidoglycan DD-transpeptidase MrdA
LHKJJB_13750 LHKJJB_13750 94.4 Morganella morganii S3 mrdA peptidoglycan DD-transpeptidase MrdA
HKOGLL_12785 HKOGLL_12785 94.4 Morganella morganii S5 mrdA peptidoglycan DD-transpeptidase MrdA
PMI_RS02100 PMI_RS02100 80.5 Proteus mirabilis HI4320 mrdA peptidoglycan DD-transpeptidase MrdA

Distribution of the homologs in the orthogroup group_1556

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1556

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AD65 0.0 962 73 1 625 1 mrdA Peptidoglycan D,D-transpeptidase MrdA Escherichia coli (strain K12)
P0AD66 0.0 962 73 1 625 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0AD67 0.0 962 73 1 625 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Escherichia coli O157:H7
P44469 0.0 697 57 5 610 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P0CL14 0.0 691 55 3 623 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
E1WGF1 0.0 691 55 3 623 3 mrdA Peptidoglycan D,D-transpeptidase MrdA Salmonella typhimurium (strain SL1344)
Q03524 2.21e-43 168 25 20 615 1 spoVD Stage V sporulation protein D Bacillus subtilis (strain 168)
P42971 7.68e-41 161 26 20 552 1 pbpC Penicillin-binding protein 3 Bacillus subtilis (strain 168)
G3XD46 9.57e-35 142 25 21 632 1 ftsI Peptidoglycan D,D-transpeptidase FtsI Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P07944 1.1e-34 143 28 16 504 2 pbp Beta-lactam-inducible penicillin-binding protein Staphylococcus aureus
P54488 1.01e-30 131 26 18 542 1 pbpA Penicillin-binding protein 2A Bacillus subtilis (strain 168)
Q89AQ0 3.03e-30 129 25 22 564 3 ftsI Peptidoglycan D,D-transpeptidase FtsI Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp)
P0AD68 3.91e-30 129 24 20 622 1 ftsI Peptidoglycan D,D-transpeptidase FtsI Escherichia coli (strain K12)
P0AD69 3.91e-30 129 24 20 622 3 ftsI Peptidoglycan D,D-transpeptidase FtsI Escherichia coli O157:H7
Q07868 3.22e-29 127 23 17 558 1 pbpB Penicillin-binding protein 2B Bacillus subtilis (strain 168)
P08149 3.43e-29 125 25 21 585 1 penA Probable peptidoglycan D,D-transpeptidase PenA Neisseria gonorrhoeae
P0A0U9 1.39e-28 124 25 21 585 3 penA Probable peptidoglycan D,D-transpeptidase PenA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
P0A0U8 1.39e-28 124 25 21 585 3 penA Probable peptidoglycan D,D-transpeptidase PenA Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q9I1K1 1.64e-27 120 23 20 582 1 pbpC Probable peptidoglycan D,D-transpeptidase PbpC Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
O85297 3.6e-24 110 22 21 629 3 ftsI Peptidoglycan D,D-transpeptidase FtsI Buchnera aphidicola subsp. Schizaphis graminum (strain Sg)
P57317 5.3e-24 110 21 23 644 3 ftsI Peptidoglycan D,D-transpeptidase FtsI Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS)
P45059 6.57e-23 107 23 16 475 1 ftsI Peptidoglycan D,D-transpeptidase FtsI Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9MUV9 1.98e-22 105 22 22 630 3 ftsI Peptidoglycan D,D-transpeptidase FtsI homolog Mesostigma viride
P0A3M6 5.73e-21 100 24 19 506 1 penA Penicillin-binding protein 2B Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P0A3M5 5.73e-21 100 24 19 506 3 penA Penicillin-binding protein 2B Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
A0A0H2ZQ75 5.73e-21 100 24 19 506 3 penA Penicillin-binding protein 2B Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466)
A0R022 8.16e-19 94 22 25 673 1 pbpB Penicillin-binding protein PbpB Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
L0T911 1.12e-16 87 23 27 662 1 pbpB Penicillin-binding protein PbpB Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
A0QNG3 1.61e-16 86 26 10 335 3 pbpA Peptidoglycan D,D-transpeptidase PbpA Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155)
P9WKD1 1.33e-15 83 26 12 367 1 pbpA Peptidoglycan D,D-transpeptidase PbpA Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WKD0 1.33e-15 83 26 12 367 3 pbpA Peptidoglycan D,D-transpeptidase PbpA Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
A2CI41 1.34e-15 84 24 12 437 3 ftsI Peptidoglycan D,D-transpeptidase FtsI homolog Chlorokybus atmophyticus
Q796K8 2.42e-14 80 24 17 495 1 pbpH Penicillin-binding protein H Bacillus subtilis (strain 168)
P14677 4.79e-13 75 21 17 572 1 pbpX Penicillin-binding protein 2x Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
P59676 9.49e-13 75 21 17 572 1 pbpX Penicillin-binding protein 2X Streptococcus pneumoniae (strain ATCC BAA-255 / R6)
P16873 4.78e-12 71 25 16 408 3 penA Probable peptidoglycan D,D-transpeptidase PenA (Fragment) Neisseria flavescens
B8H0A0 6.56e-12 72 24 15 426 1 ftsI Probable peptidoglycan D,D-transpeptidase FtsI Caulobacter vibrioides (strain NA1000 / CB15N)
Q9TL36 9.92e-11 68 21 13 357 3 ftsI Peptidoglycan D,D-transpeptidase FtsI homolog Nephroselmis olivacea
O32032 1.01e-07 58 22 26 560 2 pbpI Penicillin-binding protein 4B Bacillus subtilis (strain 168)
O87626 0.000484 47 28 5 150 3 mrcA Penicillin-binding protein 1A Neisseria flavescens

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00255
Feature type CDS
Gene mrdA
Product peptidoglycan DD-transpeptidase MrdA
Location 62221 - 64101 (strand: -1)
Length 1881 (nucleotides) / 626 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1556
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00905 Penicillin binding protein transpeptidase domain
PF03717 Penicillin-binding Protein dimerisation domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0768 Cell cycle control, cell division, chromosome partitioning (D)
Cell wall/membrane/envelope biogenesis (M)		 DM Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05515 penicillin-binding protein 2 [EC:3.4.16.4] Peptidoglycan biosynthesis
Metabolic pathways
beta-Lactam resistance		 -

Protein Sequence

MDFRDYSAESALFIRRAVVVFIGMIVLSAVLIANLYNLQINRHEDYQTRSNDNRIKLVPIPPSRGLIYDRKGTLLALNRTIYQLEIVPEKVTDLPAVLNELRDIVDLTDEDIANYEKERKRSRRFTSIALKTPLNQIEVARFSVNQYRFPGLEIKGYQRRFYPYGSALTHVIGYVAKINDKDVERLEKDGILPNYAATHDIGKLGIERYYESVLHGKTGYEEVEVNSRGRVIRQLHEQAPQAGKDIYLTVDLELQIYIEKLLTTSRAAVVVSDPRNGEILALVSNPSYDPNLFVNGISGPNYRDLLGNPDRPLINRTTQGLYPPASTVKPFISVAALSEKVITRNTTIFDPGWWQLPGSEKRYRDWKRYGHGNLNVVKAIVESADTFFYQVAYDMGIDRLSAWMTRFGYGEYSGIDLIEEYNGVMPTREWKERRYKKRWYQGDTIPVGIGQGYWTSTPIQMAKALNILINDGVVKTPHLLLGTKEGDGMLPYEQKTNTAIADIHSGYWELAKSGMYGVANAPNGTGRKFFAGTPYKAAAKSGTAQVFSYETYNASKLAERLRDHKLMIAYAPYDNPTVAVTIILENGGAGPAVGTLVRQILDHVLLGDNNTDLPDAPPSPPGSETE

Flanking regions ( +/- flanking 50bp)

TGCCCGGTTTTAACTCGCCCGACGGCGATAAGAAAAAACGCAAACAACGGATGGATTTCCGCGATTATTCTGCGGAATCGGCTCTGTTTATCCGCCGCGCCGTTGTGGTGTTTATCGGTATGATTGTTTTATCTGCCGTTCTGATTGCCAATCTTTATAATTTACAGATAAACCGCCATGAAGATTATCAGACCCGGTCAAATGATAACCGGATAAAACTCGTGCCTATTCCGCCGAGCCGGGGTCTTATCTATGATCGCAAAGGGACATTGCTTGCGCTTAACCGCACTATTTACCAACTGGAAATTGTGCCGGAAAAAGTCACTGACCTGCCGGCAGTACTGAATGAATTACGGGATATTGTCGACCTGACAGACGAGGATATCGCCAACTATGAAAAAGAGCGCAAACGCTCACGCCGCTTTACCTCTATTGCACTGAAAACCCCGCTGAACCAGATTGAGGTTGCACGGTTTTCTGTCAATCAGTACCGCTTTCCCGGACTGGAAATCAAAGGCTATCAGCGCCGCTTTTATCCGTATGGCTCTGCACTGACACATGTGATTGGTTATGTGGCAAAAATTAATGATAAAGATGTCGAACGTCTGGAAAAAGACGGCATTTTGCCTAACTATGCCGCGACTCATGATATCGGCAAGCTGGGAATCGAGCGCTATTATGAATCCGTGTTACACGGAAAAACCGGCTATGAGGAAGTGGAAGTCAACAGCCGCGGGCGCGTGATCCGCCAGTTGCATGAACAGGCACCGCAAGCCGGGAAAGATATCTATCTCACGGTTGATCTTGAGTTACAGATTTATATTGAAAAACTGCTGACCACCAGCCGTGCTGCCGTGGTTGTCAGTGATCCGCGTAACGGTGAAATTCTCGCCCTGGTCTCTAACCCGAGTTACGACCCGAACCTGTTTGTTAACGGAATTTCCGGACCGAATTACCGTGATTTACTCGGCAATCCGGATCGCCCGCTTATCAACCGCACCACTCAGGGGCTTTATCCGCCTGCATCAACCGTTAAACCCTTTATCTCTGTCGCCGCACTCAGCGAGAAAGTGATCACCCGCAATACAACTATCTTTGACCCCGGCTGGTGGCAATTGCCCGGCTCGGAAAAACGTTACCGCGACTGGAAACGCTATGGTCACGGCAATCTGAATGTTGTGAAAGCCATTGTTGAATCCGCGGATACCTTTTTCTATCAGGTGGCGTATGACATGGGTATCGATCGCCTCTCCGCCTGGATGACCCGCTTTGGTTATGGTGAGTATTCCGGTATTGACCTGATAGAAGAGTACAACGGGGTGATGCCGACCCGTGAATGGAAAGAGCGCCGCTATAAAAAACGGTGGTATCAGGGCGATACCATTCCGGTCGGGATTGGTCAGGGTTACTGGACATCCACCCCCATTCAGATGGCAAAAGCACTCAATATCCTGATTAATGACGGCGTGGTTAAAACACCGCATCTGTTACTGGGCACCAAAGAAGGTGACGGAATGCTGCCGTATGAACAAAAAACCAATACTGCCATCGCCGATATCCATTCCGGGTACTGGGAACTGGCAAAATCAGGTATGTACGGTGTTGCTAATGCCCCGAACGGCACAGGGCGGAAATTTTTTGCCGGAACGCCGTATAAAGCCGCAGCGAAATCCGGTACAGCGCAGGTATTCAGTTATGAAACCTACAATGCCAGCAAACTTGCCGAACGACTGCGTGACCATAAGCTGATGATCGCCTACGCACCTTATGATAACCCGACTGTTGCGGTTACTATCATTCTGGAAAACGGCGGAGCCGGTCCTGCAGTGGGAACATTAGTCCGCCAGATTCTGGATCACGTTCTGCTGGGGGATAACAATACTGACTTACCCGATGCGCCGCCTTCCCCGCCCGGCAGTGAAACTGAGTAATGCCCATGACTGAAAATCAACGCAAAGTATCCTTAATGACCCGCATGCAC