Homologs in group_1558

Help

6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10090 FBDBKF_10090 79.8 Morganella morganii S1 rlpA endolytic peptidoglycan transglycosylase RlpA
EHELCC_04890 EHELCC_04890 79.8 Morganella morganii S2 rlpA endolytic peptidoglycan transglycosylase RlpA
NLDBIP_04890 NLDBIP_04890 79.8 Morganella morganii S4 rlpA endolytic peptidoglycan transglycosylase RlpA
LHKJJB_13740 LHKJJB_13740 79.8 Morganella morganii S3 rlpA endolytic peptidoglycan transglycosylase RlpA
HKOGLL_12795 HKOGLL_12795 79.8 Morganella morganii S5 rlpA endolytic peptidoglycan transglycosylase RlpA
PMI_RS02090 PMI_RS02090 39.9 Proteus mirabilis HI4320 rlpA endolytic peptidoglycan transglycosylase RlpA

Distribution of the homologs in the orthogroup group_1558

Help

Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

Download SVG

Phylogeny of the RefSeq best hits of group_1558

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZDG6 1.36e-97 296 47 7 360 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Yersinia pestis
P10100 2.06e-80 252 41 6 376 1 rlpA Endolytic peptidoglycan transglycosylase RlpA Escherichia coli (strain K12)
Q8XBQ1 1.01e-79 250 41 6 376 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Escherichia coli O157:H7
Q8Z8I0 2.9e-79 249 42 9 389 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Salmonella typhi
Q8ZR01 9.36e-78 246 41 7 390 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9KTF4 2.47e-27 111 38 2 147 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q9K1A0 1.56e-22 97 40 1 127 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9JSM7 2.93e-22 97 40 1 127 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
Q57092 4.95e-22 97 39 3 135 1 rlpA Endolytic peptidoglycan transglycosylase RlpA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
A0A0H2ZFV1 5.08e-20 92 27 13 359 1 rlpA Endolytic peptidoglycan transglycosylase RlpA Pseudomonas aeruginosa (strain UCBPP-PA14)
Q9CJR6 2.58e-19 90 26 10 285 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Pasteurella multocida (strain Pm70)
Q1RJR1 1.6e-17 83 33 5 158 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia bellii (strain RML369-C)
Q9X6V6 2.41e-16 82 26 13 360 1 rlpA Endolytic peptidoglycan transglycosylase RlpA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q92I83 4.93e-16 81 35 3 121 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia conorii (strain ATCC VR-613 / Malish 7)
Q4ULW1 1.18e-15 78 30 7 170 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q9PHM1 6.71e-15 77 31 5 160 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Q68WY7 1.39e-14 77 37 2 106 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q9ZDE1 2.68e-14 75 36 2 106 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia prowazekii (strain Madrid E)
O83958 4.61e-14 75 42 0 85 3 rlpA Probable endolytic peptidoglycan transglycosylase RlpA Treponema pallidum (strain Nichols)
O67235 2.17e-13 72 40 0 82 3 rlpA Probable endolytic peptidoglycan transglycosylase RlpA Aquifex aeolicus (strain VF5)
Q8YSZ4 7e-13 72 46 1 82 3 rlpA Probable endolytic peptidoglycan transglycosylase RlpA Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Q55752 4.42e-12 69 47 0 73 3 rlpA Probable endolytic peptidoglycan transglycosylase RlpA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
O26091 4.88e-09 60 33 0 98 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZJ38 5.27e-09 60 33 0 98 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Helicobacter pylori (strain J99 / ATCC 700824)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00245
Feature type CDS
Gene rlpA
Product endolytic peptidoglycan transglycosylase RlpA
Location 60063 - 61091 (strand: -1)
Length 1029 (nucleotides) / 342 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1558
Orthogroup size 7
N. genomes 7

Actions

Genomic region

Domains

PF03330 Lytic transglycolase
PF05036 SPOR domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0797 Cell wall/membrane/envelope biogenesis (M) M Peptidoglycan lytic transglycosylase RlpA, contains C-terminal SPOR domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03642 peptidoglycan lytic transglycosylase [EC:4.2.2.29] - -

Protein Sequence

MHLRLISVTVMAVLLAGCPSTPPQIKHTAPAGPAKEILGAVPTFEPLHPGANDDYARNGQQYQIVRDPENFTQQGYAWTYGQAQNGNPTASGERVNSAELTASHPTLPIPSYARVTNMANNRMMVVRINDRGPYMPGKQMGLSRAVADRLNLLPNTRIKIDPIIVSQDGSLSGPGTVGTVVAKQSYALPGRPELGKTSAMGTPVMESAPALPVNSRPVMAQPQPESALIPAGNKSAAVQETSEVPATTSDIPSIPVTVTQPATTAPAVTTGYRIQVGAVGDADRATQWQKELSDKLGVPGMTEAFGDVYRVQLGPFTSRERATEIQGRLRQQLNMNSFILAP

Flanking regions ( +/- flanking 50bp)

ATTCATACGCACCGCAAGATGTTATCAAAAAGCTTATAATGAGGTTTTTTATGCACTTACGATTAATTTCGGTCACTGTTATGGCCGTATTGCTTGCGGGATGTCCATCAACGCCCCCGCAGATTAAACACACAGCTCCCGCCGGTCCGGCAAAAGAAATTTTAGGCGCAGTGCCGACGTTTGAACCTCTGCACCCCGGAGCCAATGACGATTATGCCCGCAACGGGCAGCAATATCAGATTGTCCGTGATCCGGAAAATTTTACGCAGCAAGGCTACGCGTGGACCTACGGCCAGGCACAAAACGGAAATCCGACGGCCAGCGGTGAACGGGTTAACAGTGCGGAATTAACCGCATCACACCCGACACTGCCGATCCCAAGCTATGCCCGCGTAACCAATATGGCGAATAACCGGATGATGGTCGTGCGCATTAATGATCGCGGACCGTACATGCCCGGCAAGCAAATGGGACTGTCACGCGCGGTTGCTGATCGCCTGAACCTGCTGCCAAACACCCGCATTAAAATTGATCCGATTATTGTTTCACAGGATGGCTCACTGAGCGGTCCCGGGACTGTCGGCACCGTTGTTGCCAAACAGAGCTATGCCCTGCCGGGTCGCCCTGAGCTCGGAAAAACCAGTGCGATGGGAACACCCGTAATGGAAAGTGCTCCGGCACTGCCGGTGAACAGCCGTCCGGTAATGGCGCAGCCACAGCCTGAGTCAGCTCTGATCCCTGCGGGCAATAAATCCGCCGCCGTGCAGGAAACGTCTGAAGTACCTGCAACCACGTCTGATATCCCGTCAATTCCTGTCACAGTGACACAACCGGCAACTACTGCGCCAGCCGTTACGACGGGTTACCGTATCCAGGTGGGTGCTGTGGGTGATGCCGATCGCGCGACACAGTGGCAGAAAGAACTCAGCGACAAACTGGGAGTTCCCGGCATGACAGAAGCTTTCGGTGATGTTTACCGCGTTCAGTTAGGACCGTTCACCAGCCGCGAACGGGCAACCGAGATTCAGGGACGGTTACGTCAGCAACTGAATATGAATTCGTTTATCCTGGCGCCATAATCTGATTTTTATGCGCCCTGTGTTGTAAAACCAAAAGTATATACCCAACG