Orthogroup:group_1558


Homologs in group_1558

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7 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Source Gene Product
FBDBKF_10090 FBDBKF_10090 Morganella morganii S1 rlpA endolytic peptidoglycan transglycosylase RlpA
EHELCC_04890 EHELCC_04890 Morganella morganii S2 rlpA endolytic peptidoglycan transglycosylase RlpA
NLDBIP_04890 NLDBIP_04890 Morganella morganii S4 rlpA endolytic peptidoglycan transglycosylase RlpA
LHKJJB_13740 LHKJJB_13740 Morganella morganii S3 rlpA endolytic peptidoglycan transglycosylase RlpA
HKOGLL_12795 HKOGLL_12795 Morganella morganii S5 rlpA endolytic peptidoglycan transglycosylase RlpA
F4V73_RS00245 F4V73_RS00245 Morganella psychrotolerans rlpA endolytic peptidoglycan transglycosylase RlpA
PMI_RS02090 PMI_RS02090 Proteus mirabilis HI4320 rlpA endolytic peptidoglycan transglycosylase RlpA

Distribution of group_1558 homologs

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Number of homologs in each genome (first column and blue bar chart)

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Phylogeny of group_1558 (midpoint rooted)


Phylogeny of the RefSeq best hits of group_1558

Orthogroup content: 7 members

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This page summarizes the annotation of all members of the orthologous group group_1558.
Gene name(s), gene product(s), a summary of protein lenght, and annotations (when available) are provided. Additionally, the number of times (occurence) an annotation is observed in the orthogroup is reported for each annotation.

Orthologs were identified with OrthoFinder. The annotation of orthologous proteins can differ depending the approach used to annotate the source genomes. Automated annotations are also subject to errors. Spurious clustering of non-orthologous proteins can also happen. This page allows to check for eventual inconsistencies.

Gene

# Gene name Occurence
1 rlpA 7

Product

# Product Occurence
1 endolytic peptidoglycan transglycosylase RlpA 7

COG entry Annotation(s)

ID Occurences Function(s) cat. Function(s) descr. Description
COG0797 7 M Cell wall/membrane/envelope biogenesis (M) Peptidoglycan lytic transglycosylase RlpA, contains C-terminal SPOR domain

Kegg Ortholog Annotation(s)

KO Occurences Description Pathways Modules
K03642 7 peptidoglycan lytic transglycosylase [EC:4.2.2.29] - -

Pfam domain Annotation(s)

Domain ID Occurences Description
PF03330 7 Lytic transglycolase
PF05036 7 SPOR domain

Annotations of the 25 SwissProt hits

Annotation Number of occurrences
Endolytic peptidoglycan transglycosylase RlpA 20
Probable endolytic peptidoglycan transglycosylase RlpA 4
Uncharacterized protein ssl3177 1

Protein length

Min length 329
Max length 342
Mean length (sd) 332.0 (5.3)
Median length 329.0

Protein length distribution