Homologs in group_1558

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10090 FBDBKF_10090 100.0 Morganella morganii S1 rlpA endolytic peptidoglycan transglycosylase RlpA
EHELCC_04890 EHELCC_04890 100.0 Morganella morganii S2 rlpA endolytic peptidoglycan transglycosylase RlpA
LHKJJB_13740 LHKJJB_13740 100.0 Morganella morganii S3 rlpA endolytic peptidoglycan transglycosylase RlpA
HKOGLL_12795 HKOGLL_12795 100.0 Morganella morganii S5 rlpA endolytic peptidoglycan transglycosylase RlpA
F4V73_RS00245 F4V73_RS00245 79.8 Morganella psychrotolerans rlpA endolytic peptidoglycan transglycosylase RlpA
PMI_RS02090 PMI_RS02090 42.4 Proteus mirabilis HI4320 rlpA endolytic peptidoglycan transglycosylase RlpA

Distribution of the homologs in the orthogroup group_1558

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1558

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q8ZDG6 5.81e-96 291 46 8 359 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Yersinia pestis
P10100 1.13e-84 262 45 7 358 1 rlpA Endolytic peptidoglycan transglycosylase RlpA Escherichia coli (strain K12)
Q8XBQ1 2.36e-83 259 45 7 358 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Escherichia coli O157:H7
Q8ZR01 2.88e-78 246 43 7 381 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q8Z8I0 1.43e-77 244 43 6 374 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Salmonella typhi
Q9KTF4 1.5e-27 111 38 3 157 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
Q57092 3.77e-24 102 26 6 271 1 rlpA Endolytic peptidoglycan transglycosylase RlpA Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q9K1A0 1.11e-20 92 38 1 127 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Neisseria meningitidis serogroup B (strain ATCC BAA-335 / MC58)
Q9CJR6 1.12e-20 93 24 7 274 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Pasteurella multocida (strain Pm70)
Q9JSM7 2.4e-20 91 38 1 127 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491)
A0A0H2ZFV1 2.19e-19 90 27 11 350 1 rlpA Endolytic peptidoglycan transglycosylase RlpA Pseudomonas aeruginosa (strain UCBPP-PA14)
Q1RJR1 2.79e-16 80 32 5 156 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia bellii (strain RML369-C)
Q9X6V6 1.28e-15 80 33 4 157 1 rlpA Endolytic peptidoglycan transglycosylase RlpA Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Q92I83 1.47e-14 76 34 3 121 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia conorii (strain ATCC VR-613 / Malish 7)
O83958 6.46e-14 74 43 0 80 3 rlpA Probable endolytic peptidoglycan transglycosylase RlpA Treponema pallidum (strain Nichols)
Q4ULW1 1.2e-13 72 33 3 121 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia felis (strain ATCC VR-1525 / URRWXCal2)
Q9PHM1 3.09e-13 72 34 2 125 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Campylobacter jejuni subsp. jejuni serotype O:2 (strain ATCC 700819 / NCTC 11168)
Q68WY7 7.37e-13 71 39 1 86 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia typhi (strain ATCC VR-144 / Wilmington)
Q9ZDE1 4.97e-12 69 35 2 101 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Rickettsia prowazekii (strain Madrid E)
Q55752 1.07e-11 68 47 0 73 3 rlpA Probable endolytic peptidoglycan transglycosylase RlpA Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q8YSZ4 1.54e-11 68 44 1 85 3 rlpA Probable endolytic peptidoglycan transglycosylase RlpA Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
O67235 2.76e-11 65 34 0 92 3 rlpA Probable endolytic peptidoglycan transglycosylase RlpA Aquifex aeolicus (strain VF5)
O26091 9.11e-11 65 35 0 99 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Helicobacter pylori (strain ATCC 700392 / 26695)
Q9ZJ38 1.01e-10 65 23 3 244 3 rlpA Endolytic peptidoglycan transglycosylase RlpA Helicobacter pylori (strain J99 / ATCC 700824)
P73455 0.000133 43 33 1 69 4 ssl3177 Uncharacterized protein ssl3177 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)

  • Number of RefSeq hits:

General

Source Morganella morganii S4
Locus tag NLDBIP_04890
Feature type CDS
Gene rlpA
Product endolytic peptidoglycan transglycosylase RlpA
Location 302312 - 303301 (strand: 1)
Length 990 (nucleotides) / 329 (amino acids)

Contig

Accession ZDB_520
Length 336657 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1558
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF03330 Lytic transglycolase
PF05036 SPOR domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0797 Cell wall/membrane/envelope biogenesis (M) M Peptidoglycan lytic transglycosylase RlpA, contains C-terminal SPOR domain

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K03642 peptidoglycan lytic transglycosylase [EC:4.2.2.29] - -

Protein Sequence

MRLQWIAVTAMAALLAGCPSVQPPVKQTPPPGPAKEILGAVPAYEPLHPGANNDYVRNGQQYQIVRDPENFSQQGYAWIYGQAQNGNRTATGEIVNSAELTASHPTLPIPGYARITNMANNRMMVVRINDRGPYMPGKQIGLSRAVADRLNLLPNTKIKIDPIVVAEDGSLSGSGTVGTVVAKQSYALPGRPELGKTSALGTPVTNTTPVVPINSRPVMAQPQPESALIPTVKQPAAPAETQTENTASPAPQQAAVSGYRVQVGAVASAERATQWQKELSDKLGVPGMTESSGDMFRVQLGPFTSRERAAEIQERLQQQLNMNSFILAP

Flanking regions ( +/- flanking 50bp)

ACACACCGTAAGATGCTGTCAAAAAGCTTATAATACATTACGAGGTTTTCATGCGTTTACAATGGATTGCGGTCACAGCGATGGCCGCGTTGCTGGCAGGTTGCCCGTCAGTGCAGCCGCCGGTCAAACAGACACCGCCGCCGGGCCCGGCAAAAGAGATTCTCGGCGCCGTACCGGCCTACGAGCCGCTGCATCCGGGCGCGAATAATGATTACGTCCGTAATGGTCAGCAGTATCAGATTGTCCGTGATCCGGAAAACTTCAGTCAGCAGGGATATGCCTGGATTTATGGTCAGGCCCAGAACGGTAACCGGACCGCTACCGGCGAAATCGTCAACAGCGCCGAACTGACCGCATCCCACCCGACGCTGCCAATCCCCGGCTATGCGCGGATCACCAATATGGCGAATAACCGCATGATGGTGGTGCGGATTAACGATCGCGGCCCGTATATGCCGGGCAAACAGATCGGGCTTTCCCGCGCTGTCGCAGATCGCCTGAACCTGCTGCCGAATACCAAAATTAAAATTGACCCGATTGTGGTTGCGGAAGACGGCTCGCTGAGCGGCTCCGGAACTGTCGGCACTGTGGTCGCCAAACAGAGCTATGCCCTGCCGGGCCGCCCGGAACTGGGCAAAACCAGTGCGCTCGGTACGCCGGTGACCAATACCACCCCGGTGGTGCCGATCAACAGCCGTCCTGTTATGGCACAACCGCAGCCGGAATCCGCACTGATCCCGACCGTCAAACAGCCCGCAGCACCGGCAGAAACCCAAACTGAGAACACCGCCTCACCTGCACCGCAGCAGGCCGCTGTCAGCGGTTACCGTGTCCAGGTGGGTGCCGTGGCAAGTGCGGAACGTGCAACACAGTGGCAGAAAGAACTCAGCGATAAACTGGGTGTGCCCGGTATGACAGAATCCTCCGGTGATATGTTCCGTGTCCAGCTGGGGCCGTTTACCAGCCGTGAACGAGCCGCCGAAATACAGGAACGCCTTCAGCAGCAGCTGAATATGAATTCATTTATCCTGGCACCGTAAAACAGGCTGTGATAACACTACGCGCTGTCATAGCAGTTTTGCTATGATAG