Homologs in group_1570

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10170 FBDBKF_10170 92.5 Morganella morganii S1 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX
EHELCC_04970 EHELCC_04970 92.5 Morganella morganii S2 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX
NLDBIP_04970 NLDBIP_04970 92.5 Morganella morganii S4 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX
LHKJJB_13660 LHKJJB_13660 92.5 Morganella morganii S3 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX
HKOGLL_12875 HKOGLL_12875 92.5 Morganella morganii S5 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX
PMI_RS02020 PMI_RS02020 81.8 Proteus mirabilis HI4320 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX

Distribution of the homologs in the orthogroup group_1570

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1570

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AFM2 8.01e-178 498 71 1 329 1 proX Glycine betaine/proline betaine-binding periplasmic protein Escherichia coli (strain K12)
P0AFM3 8.01e-178 498 71 1 329 3 proX Glycine betaine/proline betaine-binding periplasmic protein Escherichia coli O157:H7
E0SCY3 1.19e-172 485 68 1 332 1 ousX Glycine betaine-binding periplasmic protein OusX Dickeya dadantii (strain 3937)
Q8ZML1 9.81e-171 480 68 2 330 2 proX Glycine betaine/proline betaine-binding periplasmic protein Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q9RR44 0.000332 45 26 6 169 1 gbuC Glycine betaine/carnitine transport binding protein GbuC Listeria monocytogenes serotype 1/2a (strain 10403S)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00170
Feature type CDS
Gene proX
Product glycine betaine/L-proline ABC transporter substrate-binding protein ProX
Location 44644 - 45642 (strand: -1)
Length 999 (nucleotides) / 332 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1570
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF04069 Substrate binding domain of ABC-type glycine betaine transport system

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG2113 Amino acid transport and metabolism (E) E ABC-type proline/glycine betaine transport system, periplasmic component

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02002 glycine betaine/proline transport system substrate-binding protein ABC transporters -

Protein Sequence

MRKTAIMAIALSALIGTQALADTALPGKGIKVLPVQSTITEETFQTLIVNKALEELGYDVQPIQEVDYNVAYASIANGDATFMAVSWVPLHNSQYKAAGGDDKFYRKGDYVVNAAQGYLIDKKTAEKYNITNIEQLKDPEIAKLFDTNGNGKADLTGCNPGWGCEAAINNHLKAYKLNNTVEHNQGNYAAMMADTITRYKEGKPILYYTWTPYWISDELKPGRDVVWLQVPFSSMPDGEKIETKLPNGKNYGFPPSTMHITANKAWAEKNPAAAELFAIMKLPVAAINAQNLRMHDGQNSQADIERHANAWIKANQSTFDGWISRARQAAEK

Flanking regions ( +/- flanking 50bp)

CCTGCGGCACATCACCCCGGTCTGCGGCAGGCACAACAAGAGGGAAAACGATGCGTAAGACAGCAATTATGGCAATCGCCTTATCGGCACTCATTGGTACTCAGGCGCTTGCGGATACAGCCCTGCCCGGCAAAGGGATCAAAGTGCTGCCTGTACAAAGCACCATCACTGAAGAGACATTTCAGACCCTTATCGTCAATAAAGCCCTGGAAGAGCTCGGCTATGATGTACAGCCGATTCAGGAAGTGGATTACAACGTCGCTTATGCGTCTATCGCCAACGGTGATGCCACATTTATGGCAGTAAGCTGGGTGCCTCTGCATAATTCACAGTACAAAGCCGCCGGTGGCGACGACAAATTTTACCGTAAAGGGGATTATGTCGTGAATGCCGCTCAGGGGTATCTTATTGATAAGAAAACCGCTGAGAAATATAACATTACCAATATTGAGCAGTTAAAAGACCCTGAAATCGCCAAACTGTTTGATACCAACGGCAACGGCAAAGCTGACCTGACCGGCTGTAATCCGGGCTGGGGCTGCGAGGCCGCCATTAACAATCATCTGAAAGCATACAAACTGAATAATACGGTTGAACATAATCAGGGTAACTATGCCGCAATGATGGCTGACACCATCACGCGTTATAAAGAAGGAAAACCTATCCTGTATTACACCTGGACCCCGTACTGGATAAGTGACGAACTTAAACCGGGTCGCGATGTGGTCTGGTTACAGGTGCCGTTTTCCTCTATGCCGGATGGTGAAAAAATCGAGACAAAATTACCAAACGGTAAAAACTACGGTTTCCCGCCAAGCACCATGCATATTACAGCAAACAAAGCCTGGGCTGAGAAAAACCCGGCAGCGGCTGAGCTGTTTGCCATCATGAAACTGCCGGTGGCGGCGATCAATGCCCAGAACCTGCGTATGCATGACGGACAAAACTCACAGGCTGATATTGAGCGCCATGCAAATGCCTGGATTAAAGCGAATCAGTCCACATTTGACGGATGGATTAGCCGGGCGCGTCAGGCGGCTGAAAAATAATCAATTTTTAGTTTTTATACCTCACAGCCATGCTTGCATGGCTGTTTTTT