COG2113


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG2113, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description ABC-type proline/glycine betaine transport system, periplasmic component
Function(s) descr. Amino acid transport and metabolism (E)

Occurence in the database

COG2113 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1570 FBDBKF_10170 125556 126554 1 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX Morganella morganii S1
1 group_1570 EHELCC_04970 317521 318519 1 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX Morganella morganii S2
2 group_1570 NLDBIP_04970 317317 318315 1 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX Morganella morganii S4
3 group_1570 LHKJJB_13660 17063 18061 -1 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX Morganella morganii S3
4 group_1570 HKOGLL_12875 126337 127335 1 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX Morganella morganii S5
5 group_1570 F4V73_RS00170 44644 45642 -1 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX Morganella psychrotolerans
6 group_1570 PMI_RS02020 477460 478455 -1 proX glycine betaine/L-proline ABC transporter substrate-binding protein ProX Proteus mirabilis HI4320