Homologs in group_1576

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10215 FBDBKF_10215 78.8 Morganella morganii S1 yfiM YfiM family lipoprotein
EHELCC_05015 EHELCC_05015 78.8 Morganella morganii S2 yfiM YfiM family lipoprotein
NLDBIP_05015 NLDBIP_05015 78.8 Morganella morganii S4 yfiM YfiM family lipoprotein
LHKJJB_13615 LHKJJB_13615 78.8 Morganella morganii S3 yfiM YfiM family lipoprotein
HKOGLL_12920 HKOGLL_12920 78.8 Morganella morganii S5 yfiM YfiM family lipoprotein
PMI_RS01950 PMI_RS01950 56.6 Proteus mirabilis HI4320 - YfiM family lipoprotein

Distribution of the homologs in the orthogroup group_1576

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1576

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P46126 1.84e-36 122 56 1 104 4 yfiM Uncharacterized protein YfiM Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00115
Feature type CDS
Gene -
Product YfiM family lipoprotein
Location 30798 - 31139 (strand: -1)
Length 342 (nucleotides) / 113 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1576
Orthogroup size 7
N. genomes 7

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Genomic region

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG5544 Function unknown (S) S Uncharacterized conserved protein YfiM, DUF2279 family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K05811 putative lipoprotein - -

Protein Sequence

MPLKHTVHILLTAALLLSGGCTMHLANDSWTGRDKAQHFAFSTAAAIAGNAYGDHQNWSHRHSAQFGIGFSVALGAAKEFYDSRPAGTGWSVKDFAYDVAGAVAGYSLYQSLK

Flanking regions ( +/- flanking 50bp)

AATCCCGGCACTGTCCGGGATTTTTTTGCGGATTTAACAGGGAGTTAATCATGCCGCTTAAACATACTGTCCATATACTCCTCACGGCCGCACTGTTACTCTCAGGCGGTTGCACCATGCATCTTGCAAATGACAGCTGGACCGGACGGGACAAAGCGCAGCACTTTGCCTTTTCCACCGCTGCCGCCATTGCCGGTAATGCTTATGGTGACCATCAGAATTGGTCACACCGCCACAGCGCACAGTTCGGTATCGGGTTCTCTGTGGCATTGGGTGCCGCGAAAGAATTTTATGACAGCCGCCCTGCCGGCACCGGCTGGAGTGTAAAAGATTTTGCGTATGATGTTGCCGGAGCGGTTGCCGGTTACAGTTTGTACCAATCGCTGAAATAAAAATCTGATGCCCGGGGATAGTTACTTAGCCGGGATACCTGAACCATTGC