COG5544


Help to interpret the results

Three outputs have been generated:
General: this result contains the description and frequency of the selected COG entries COG5544, of which KO pathways and KO modules it is part. Additionally, its occurence in the database is reported.
Proteins list: list of occurences of the COG entries within the database. 7 occurences are identified. The table reports the orthogroup, the organism in which each occurrence has been found, and the locus tag enriched by start and stop position, strand, gene name and product.
Clicking on the Ortohgroup name or locus you will be redirected to further info.
Profiles: Phylogenetic tree annotated with
- the presence of the COG entry(ies) of interest within all the genomes of the database (first column)
- the size of the orthogroup(s) in which the reported COG entries has been clustered.
In red the COG entries with positive hit(s) in the corresponding genome.
In green the discrepencies between orthogroup clustering and COG entries prediction. Green homologs (same orthogroup) are not positive hit(s) for the considered COG entries.

Variations within orthogroups may be due to the clustering of multi domain proteins or because of erroneous homolog clustering or COG entries prediction.

Description

Description Uncharacterized conserved protein YfiM, DUF2279 family
Function(s) descr. Function unknown (S)

Occurence in the database

COG5544 is associated with 7 different proteins (see tab "Protein list" and "Profile")
The 7 proteins are classified into 1 different orthogroup(s)
# Orthogroup Locus Start Stop S. Gene Product Organism
0 group_1576 FBDBKF_10215 138678 139019 1 yfiM YfiM family lipoprotein Morganella morganii S1
1 group_1576 EHELCC_05015 330643 330984 1 yfiM YfiM family lipoprotein Morganella morganii S2
2 group_1576 NLDBIP_05015 330439 330780 1 yfiM YfiM family lipoprotein Morganella morganii S4
3 group_1576 LHKJJB_13615 4598 4939 -1 yfiM YfiM family lipoprotein Morganella morganii S3
4 group_1576 HKOGLL_12920 139459 139800 1 yfiM YfiM family lipoprotein Morganella morganii S5
5 group_1576 F4V73_RS00115 30798 31139 -1 YfiM family lipoprotein Morganella psychrotolerans
6 group_1576 PMI_RS01950 458689 459036 -1 YfiM family lipoprotein Proteus mirabilis HI4320