Homologs in group_112

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10 homologs were identified in 7 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_01325 FBDBKF_01325 31.3 Morganella morganii S1 tssK type VI secretion system baseplate subunit TssK
EHELCC_00220 EHELCC_00220 31.3 Morganella morganii S2 tssK type VI secretion system baseplate subunit TssK
NLDBIP_03240 NLDBIP_03240 31.3 Morganella morganii S4 tssK type VI secretion system baseplate subunit TssK
LHKJJB_04755 LHKJJB_04755 31.3 Morganella morganii S3 tssK type VI secretion system baseplate subunit TssK
HKOGLL_02290 HKOGLL_02290 31.3 Morganella morganii S5 tssK type VI secretion system baseplate subunit TssK
F4V73_RS02345 F4V73_RS02345 30.8 Morganella psychrotolerans tssK type VI secretion system baseplate subunit TssK
F4V73_RS06980 F4V73_RS06980 23.6 Morganella psychrotolerans tssK type VI secretion system baseplate subunit TssK
F4V73_RS09345 F4V73_RS09345 29.5 Morganella psychrotolerans tssK type VI secretion system baseplate subunit TssK
F4V73_RS16860 F4V73_RS16860 22.7 Morganella psychrotolerans tssK type VI secretion system baseplate subunit TssK
PMI_RS03650 PMI_RS03650 30.0 Proteus mirabilis HI4320 tssK type VI secretion system baseplate subunit TssK

Distribution of the homologs in the orthogroup group_112

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_112

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
Q9I753 1.55e-84 269 34 4 449 1 tssK1 Type VI secretion system baseplate component TssK1 Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

  • Number of RefSeq hits:

General

Source Morganella psychrotolerans
Locus tag F4V73_RS00035
Feature type CDS
Gene tssK
Product type VI secretion system baseplate subunit TssK
Location 10026 - 11381 (strand: -1)
Length 1356 (nucleotides) / 451 (amino acids)

Contig

Accession term accessions NZ_VXKB01000001 accessions NZ_VXKB01000000 Name: value, dtype: object
Length 2012992 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_112
Orthogroup size 11
N. genomes 7

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Genomic region

Domains

PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3522 Intracellular trafficking, secretion, and vesicular transport (U) U Predicted component of the type VI protein secretion system

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K11893 type VI secretion system protein ImpJ Biofilm formation - Pseudomonas aeruginosa -

Virulence factor Annotation(s)

VF gene ID Protein VF ID Category
VFG041086 type VI secretion system baseplate subunit TssK VF1036 Effector delivery system

Protein Sequence

MLLKQRVAWVEGMLMEPQHFQQQERYLEHFTDMRIRSTDALAWGFHQIHIDSGLLDQGKISLVRTKGIFPDGTPFDLGNNDPLPIPFDPGPDSQGQIVCLSVLMDMPGNTFIDLSQAKSHSRFSVLNADVRDRNAGLASEGTPLVATLQLGSLRTHLNLRSAISDAESLLPVARIVERTRDGRLILDDKFLPPMLDFRAFGWLKNAVTELLGLMVQRLESVYRPDVPLTTGGLTELLELLLLQTLSEYHLRLAHLLAQPQVHPERLFFTLLGLLGRLSIIPGKENTSLHQQFHYSHNEPQNAYFSLFAALRRALSLVIEAPAIALPFVERGDNIYLYQNDPQLRLEKLIFIVSAELPGDTMRTTFPAQTKLAPVEKIVQLIDLQLPGVRITPMPSPPRHIPYYPNSIYFEVDNADPMYRDMLSGSAAALSIVGDFPGLRFEAWGLRQGRVG

Flanking regions ( +/- flanking 50bp)

TCAGGAAAGCCCTGAAAACCACTTTTTAGCGAAAAGCTGAGGACACTGATATGTTACTTAAACAGCGTGTAGCCTGGGTTGAAGGAATGCTGATGGAACCACAGCATTTTCAGCAGCAGGAGCGTTATCTCGAACACTTTACAGATATGCGTATCCGCAGTACAGATGCGCTGGCATGGGGATTCCATCAGATCCATATCGACAGCGGTTTACTCGATCAGGGTAAAATATCGCTGGTGCGCACCAAAGGGATATTTCCTGACGGCACTCCGTTCGATTTGGGTAATAATGATCCGCTGCCCATTCCGTTCGATCCCGGTCCGGATAGCCAGGGGCAGATAGTGTGTCTTTCTGTCCTGATGGACATGCCGGGCAATACCTTTATCGACCTGTCACAGGCAAAAAGTCACAGCCGTTTCAGTGTGCTCAATGCGGATGTCCGTGATCGCAATGCCGGTCTGGCCTCTGAGGGAACGCCGCTGGTGGCCACATTACAGTTAGGCTCTCTCCGGACACATCTGAACCTGAGAAGTGCAATCAGTGATGCGGAATCACTTCTGCCTGTCGCCCGTATTGTTGAGCGCACCCGTGACGGACGACTTATCCTGGATGATAAATTCCTGCCGCCGATGCTGGACTTCCGTGCCTTCGGCTGGCTTAAAAATGCCGTAACAGAGCTGCTCGGTTTAATGGTACAGCGGCTCGAAAGTGTTTACCGCCCGGATGTTCCGCTCACCACCGGCGGTCTGACTGAATTACTGGAACTACTGTTACTGCAAACACTCAGTGAATATCACCTGCGCCTGGCGCATCTGCTCGCGCAGCCGCAGGTTCATCCGGAGAGGCTGTTTTTCACACTTCTCGGTCTGCTCGGGCGGCTGAGTATTATCCCCGGAAAGGAAAATACATCACTCCACCAGCAATTTCATTATTCACACAATGAACCACAAAATGCGTATTTTTCCCTGTTCGCAGCCCTGCGGCGCGCATTGTCACTGGTCATTGAAGCACCGGCTATCGCACTGCCGTTTGTTGAGCGCGGGGATAATATTTATCTGTATCAAAACGATCCGCAGCTGCGCCTGGAAAAACTGATCTTTATCGTCAGCGCAGAACTTCCCGGTGACACAATGCGGACCACCTTCCCGGCTCAGACCAAACTGGCTCCGGTGGAAAAAATCGTCCAGCTTATCGATTTACAATTACCCGGTGTACGAATTACACCCATGCCGTCACCGCCACGGCACATCCCGTATTACCCGAACAGCATCTATTTTGAAGTGGATAATGCCGACCCGATGTACCGGGACATGCTGTCCGGAAGTGCAGCGGCGCTGAGTATTGTGGGGGATTTTCCGGGATTACGTTTTGAGGCATGGGGCTTACGTCAGGGGAGAGTAGGATGAATGAATTCGAACGCCAAATAAGAAATGCAATATCCACGGCCCGTACCGGC