Homologs in group_3045

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18185 FBDBKF_18185 100.0 Morganella morganii S1 soxR DNA-binding transcriptional regulator, MerR family
NLDBIP_18145 NLDBIP_18145 100.0 Morganella morganii S4 soxR DNA-binding transcriptional regulator, MerR family
LHKJJB_18340 LHKJJB_18340 100.0 Morganella morganii S3 soxR DNA-binding transcriptional regulator, MerR family
HKOGLL_18075 HKOGLL_18075 100.0 Morganella morganii S5 soxR DNA-binding transcriptional regulator, MerR family
F4V73_RS01730 F4V73_RS01730 75.4 Morganella psychrotolerans - MerR family transcriptional regulator

Distribution of the homologs in the orthogroup group_3045

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3045

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P44558 4.62e-17 74 32 2 124 1 HI_0186 Uncharacterized HTH-type transcriptional regulator HI_0186 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P37510 1.83e-12 62 32 3 120 4 yyaN Uncharacterized HTH-type transcriptional regulator YyaN Bacillus subtilis (strain 168)
O06008 6.41e-11 58 26 1 111 1 adhR HTH-type transcriptional regulator AdhR Bacillus subtilis (strain 168)
Q53W62 1.7e-07 51 36 2 86 1 carH HTH-type transcriptional repressor CarH Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)
Q9X5X4 1.14e-06 47 28 3 108 1 hmrR HTH-type transcriptional regulator HmrR Sinorhizobium medicae (strain WSM419)
P22874 3.93e-06 46 36 1 65 4 merR Mercuric resistance operon regulatory protein Staphylococcus aureus
P22853 5.52e-06 45 25 1 101 1 merR1 Mercuric resistance operon regulatory protein Bacillus cereus
Q45666 6.95e-06 45 28 3 107 1 tnrA HTH-type transcriptional regulator TnrA Bacillus subtilis (strain 168)
P0A4T9 7.65e-06 46 30 2 101 1 tipA HTH-type transcriptional activator TipA Streptomyces lividans
P0A4T8 7.65e-06 46 30 2 101 3 tipA HTH-type transcriptional activator TipA Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
O07586 1.78e-05 44 29 1 81 4 cueR HTH-type transcriptional regulator CueR Bacillus subtilis (strain 168)
Q9X5V4 2.13e-05 44 25 0 104 4 hmrR HTH-type transcriptional regulator HmrR Rhizobium leguminosarum bv. viciae
P44617 2.23e-05 43 28 2 113 3 HI_0293 Probable heavy metal-dependent transcriptional regulator HI_0293 Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
P40183 3.55e-05 43 36 1 72 2 hspR Putative heat shock protein HspR Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)
Q55963 5.9e-05 43 31 1 76 4 slr0701 Uncharacterized HTH-type transcriptional regulator slr0701 Synechocystis sp. (strain ATCC 27184 / PCC 6803 / Kazusa)
Q51506 0.000114 42 29 1 100 3 soxR Redox-sensitive transcriptional activator SoxR Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
P75989 0.000118 43 24 2 109 1 bluR HTH-type transcriptional repressor BluR Escherichia coli (strain K12)
P58379 0.000128 42 25 3 108 3 hmrR2 Heavy metal-dependent transcription regulator 2 Rhizobium meliloti (strain 1021)
P67670 0.000391 41 34 1 63 3 BQ2027_MB1859 Uncharacterized HTH-type transcriptional regulator Mb1859 Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
P9WME7 0.000391 41 34 1 63 1 Rv1828 Uncharacterized HTH-type transcriptional regulator Rv1828 Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv)
P9WME6 0.000391 41 34 1 63 3 MT1876 Uncharacterized HTH-type transcriptional regulator MT1876 Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh)
Q8ZCA8 0.000428 40 28 2 81 3 cueR HTH-type transcriptional regulator CueR Yersinia pestis
P50330 0.000497 41 31 2 96 4 nolA Nodulation protein NolA Bradyrhizobium sp. (strain NC92)
P22896 0.000601 40 30 4 115 4 merR Mercuric resistance operon regulatory protein (Fragment) Acidithiobacillus ferrooxidans
P45277 0.000802 40 23 1 93 3 zntR HTH-type transcriptional regulator ZntR homolog Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
Q8FK74 0.001 39 26 2 80 3 cueR HTH-type transcriptional regulator CueR Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_18220
Feature type CDS
Gene soxR
Product DNA-binding transcriptional regulator, MerR family
Location 3353 - 3721 (strand: -1)
Length 369 (nucleotides) / 122 (amino acids)

Contig

Accession ZDB_236
Length 34990 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3045
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF13411 MerR HTH family regulatory protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0789 Transcription (K) K DNA-binding transcriptional regulator, MerR family

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K21745 MerR family transcriptional regulator, aldehyde-responsive regulator - -

Protein Sequence

MHYSISEFSALTGFSIHTLRFYEKEGILIPQRRANNHRCYSARDAEWVTFITRLKETGMPLKSIRHYADLRAQGEETAQARMDLLLAHSGELQQQIAVLNDHFQHLERKIDYYRDLLATAAI

Flanking regions ( +/- flanking 50bp)

TCCGCTGAGCGTAAAAGATAGAGTTCACTCGAGGTCAAGAGGTTTCTTGCATGCATTATTCCATCAGTGAGTTTTCTGCCTTAACCGGTTTCAGTATCCATACCCTGCGGTTTTATGAAAAAGAAGGCATTTTGATCCCGCAGCGCCGGGCAAATAATCACCGTTGTTATTCCGCCCGTGATGCGGAGTGGGTGACGTTTATCACCCGACTGAAAGAAACCGGCATGCCGCTGAAATCCATCAGACATTATGCGGATTTACGGGCTCAGGGAGAGGAAACGGCACAGGCGCGTATGGATTTACTGCTGGCACACAGCGGGGAATTACAACAGCAGATAGCGGTGCTGAATGATCATTTTCAGCACCTGGAACGAAAGATAGATTACTACCGCGATTTACTGGCCACGGCAGCAATCTGAGCCGCGTCAGTCCGCAGCACTGAGGCGGAATTTCTGTACGGAGTTCTGCA