Homologs in group_3369

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4 homologs were identified in 4 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_11520 FBDBKF_11520 100.0 Morganella morganii S1 - DNA polymerase II
NLDBIP_18650 NLDBIP_18650 100.0 Morganella morganii S4 - DNA polymerase II
LHKJJB_17880 LHKJJB_17880 100.0 Morganella morganii S3 - DNA polymerase II
HKOGLL_18770 HKOGLL_18770 100.0 Morganella morganii S5 - DNA polymerase II

Distribution of the homologs in the orthogroup group_3369

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3369

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0ABT1 2.5e-16 69 52 0 59 3 holE DNA polymerase III subunit theta Shigella flexneri
P0ABS8 2.5e-16 69 52 0 59 1 holE DNA polymerase III subunit theta Escherichia coli (strain K12)
P0ABS9 2.5e-16 69 52 0 59 3 holE DNA polymerase III subunit theta Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)
P0ABT0 2.5e-16 69 52 0 59 3 holE DNA polymerase III subunit theta Escherichia coli O157:H7

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_17440
Feature type CDS
Gene -
Product DNA polymerase II
Location 584 - 808 (strand: -1)
Length 225 (nucleotides) / 74 (amino acids)

Contig

Accession ZDB_233
Length 42053 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3369
Orthogroup size 5
N. genomes 5

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Genomic region

Domains

PF06440 DNA polymerase III, theta subunit

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K02345 DNA polymerase III subunit theta [EC:2.7.7.7] DNA replication
Mismatch repair
Homologous recombination		 -

Protein Sequence

MHNIANLPQNEKDKINADLAASGIAYKERLGLPYDLYETENQQPEHLRQYFRERLEHYREIGKRFPRGFEYEKN

Flanking regions ( +/- flanking 50bp)

TCCTCTCCCCCTGCTATACTCCCATCATCACCCACCACTCCGAATCCAACATGCACAATATCGCCAACCTGCCACAAAACGAAAAAGACAAAATTAATGCCGATTTAGCCGCATCCGGTATCGCGTACAAAGAAAGACTCGGACTGCCGTATGATCTGTACGAAACAGAAAACCAGCAGCCCGAGCATTTACGCCAGTACTTCAGAGAGAGGCTGGAGCACTACAGGGAGATCGGGAAAAGGTTTCCGCGCGGGTTCGAGTATGAGAAGAACTAATTATTTTCCTGCGCTTCACGTTCTGCCTGCTCACGCTCCATCTGTTCAGC