Homologs in group_3039

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_18135 FBDBKF_18135 100.0 Morganella morganii S1 - Pilin (Type 1 fimbria component protein)
NLDBIP_17615 NLDBIP_17615 100.0 Morganella morganii S4 - Pilin (Type 1 fimbria component protein)
LHKJJB_17535 LHKJJB_17535 100.0 Morganella morganii S3 - Pilin (Type 1 fimbria component protein)
HKOGLL_17350 HKOGLL_17350 100.0 Morganella morganii S5 - Pilin (Type 1 fimbria component protein)
F4V73_RS10340 F4V73_RS10340 74.4 Morganella psychrotolerans - fimbrial protein

Distribution of the homologs in the orthogroup group_3039

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_3039

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P76499 2.56e-13 67 31 5 180 2 yfcP Uncharacterized fimbrial-like protein YfcP Escherichia coli (strain K12)
P04740 2.63e-08 54 25 5 173 3 KS71A KS71A fimbrillin Escherichia coli
P75860 1.1e-07 52 27 5 151 2 ycbV Uncharacterized fimbrial-like protein YcbV Escherichia coli (strain K12)
Q8X5K5 2.11e-06 48 24 5 142 2 lpfA Probable major fimbrial subunit LpfA Escherichia coli O157:H7
P43660 3.28e-06 48 22 4 144 3 lpfA Long polar fimbria protein A Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q04681 1.2e-05 47 24 4 152 1 pmfA Major fimbrial subunit Proteus mirabilis (strain HI4320)
P53521 1.61e-05 46 26 3 143 3 pmfF Putative minor fimbrial subunit PmfF Proteus mirabilis (strain HI4320)
P13421 0.000141 43 25 5 156 1 smfA Fimbria A protein Serratia marcescens
Q47223 0.000819 42 29 4 123 1 fimA Type-1 fimbrial protein, A chain Escherichia coli

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_16835
Feature type CDS
Gene -
Product Pilin (Type 1 fimbria component protein)
Location 28432 - 28974 (strand: -1)
Length 543 (nucleotides) / 180 (amino acids)

Contig

Accession ZDB_230
Length 55766 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_3039
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00419 Fimbrial protein

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3539 Cell motility (N) N Pilin (type 1 fimbrial protein)

Protein Sequence

MNHPADFSLLFSAALIFSAAFIPAGHAADNLRVIGELYNDPCTLLPENKDLVVDFSDVSLPDLYEGVEVRKSFSLILSDCDITDMNRFKIKFTGTGTPDMPSYLALDPSSDAGGFAIGVRTDNIPLIPLNQFSNAITIAGNGENNIRFTAFLQVDPKAKAGKTIKYGAFNSTAFLTIDYF

Flanking regions ( +/- flanking 50bp)

ACGCCCGGCTCCTTCAGCGGCACCGGCACTGTAACGATGGAGTATTTCTGATGAACCACCCTGCTGATTTCAGTCTGTTATTCAGCGCTGCACTGATATTCTCCGCTGCCTTTATTCCGGCGGGGCACGCCGCCGATAACCTGCGAGTGATCGGCGAGCTGTACAATGACCCCTGCACGCTGCTGCCGGAAAATAAAGATCTGGTGGTGGATTTCAGTGATGTTTCACTGCCGGATTTGTATGAGGGGGTTGAGGTCCGCAAATCATTCTCTCTGATCCTGTCTGACTGCGATATCACGGATATGAACCGGTTTAAGATTAAATTCACCGGGACCGGGACCCCGGATATGCCGTCCTATCTGGCGCTGGATCCGTCCAGTGACGCAGGCGGGTTTGCCATCGGAGTGCGGACAGATAATATTCCGCTGATCCCGCTGAATCAGTTTTCCAACGCCATTACTATCGCCGGAAACGGTGAGAACAACATCCGTTTTACCGCTTTTTTGCAGGTTGATCCGAAAGCAAAAGCCGGTAAAACCATTAAGTACGGCGCGTTTAATTCCACCGCGTTTCTGACTATCGACTATTTCTGAGGCCGGTATGACCAAGATCCTCCGTTATCTCACTGTGCTGACCACTCTCC