Homologs in group_2836

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5 homologs were identified in 5 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_10510 FBDBKF_10510 100.0 Morganella morganii S1 fimD Outer membrane usher protein FimD/PapC
NLDBIP_14675 NLDBIP_14675 100.0 Morganella morganii S4 fimD Outer membrane usher protein FimD/PapC
LHKJJB_14670 LHKJJB_14670 100.0 Morganella morganii S3 fimD Outer membrane usher protein FimD/PapC
HKOGLL_13290 HKOGLL_13290 100.0 Morganella morganii S5 fimD Outer membrane usher protein FimD/PapC
F4V73_RS14220 F4V73_RS14220 72.5 Morganella psychrotolerans - fimbria/pilus outer membrane usher protein

Distribution of the homologs in the orthogroup group_2836

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_2836

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P43662 1.91e-142 444 31 21 851 3 lpfC Outer membrane usher protein LpfC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P46009 6.25e-112 365 30 19 805 3 focD Outer membrane usher protein FocD Escherichia coli
P30130 8.68e-112 365 29 23 865 1 fimD Outer membrane usher protein FimD Escherichia coli (strain K12)
P26949 1.41e-110 360 30 19 781 1 caf1A F1 capsule-anchoring protein Yersinia pestis
P42915 9.11e-110 358 29 22 862 2 yraJ Outer membrane usher protein YraJ Escherichia coli (strain K12)
P75857 9.38e-110 359 30 21 847 2 elfC Probable outer membrane usher protein ElfC Escherichia coli (strain K12)
Q8XDD1 1.6e-109 358 29 19 845 2 elfC Probable outer membrane usher protein ElfC Escherichia coli O157:H7
Q56983 1.02e-102 340 27 21 860 3 psaC Outer membrane usher protein PsaC Yersinia pseudotuberculosis serotype I (strain IP32953)
P31527 1.02e-102 340 27 21 860 3 psaC Outer membrane usher protein PsaC Yersinia pestis
P53517 1.86e-99 332 27 22 865 3 afaC Outer membrane usher protein AfaC Escherichia coli
P37924 5.14e-98 328 27 21 867 3 fimD Outer membrane usher protein FimD Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
P33408 3.1e-93 314 27 20 815 3 myfC Outer membrane usher protein MyfC Yersinia enterocolitica
P77468 1.3e-92 313 27 24 838 2 sfmD Outer membrane usher protein SfmD Escherichia coli (strain K12)
P46005 4.18e-88 300 27 20 819 3 aggC Outer membrane usher protein AggC Escherichia coli
P33388 1.98e-77 271 29 19 773 3 sefC Outer membrane usher protein SefC Salmonella enteritidis
P46000 8.59e-75 264 26 26 841 3 fasD Outer membrane usher protein FasD Escherichia coli
P33129 2.8e-73 260 26 30 863 1 htrE Outer membrane usher protein HtrE Escherichia coli (strain K12)
P33341 1.07e-71 255 26 20 743 2 yehB Outer membrane usher protein YehB Escherichia coli (strain K12)
P33397 8.5e-70 250 27 28 825 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P15484 7.34e-69 249 28 15 714 3 None Outer membrane usher protein CS3-2 Escherichia coli
P45998 1.84e-68 246 26 30 827 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P45997 2.81e-67 243 26 28 825 3 hifC Outer membrane usher protein HifC Haemophilus influenzae
P53514 4.02e-65 236 28 25 738 3 pmfC Outer membrane usher protein PmfC Proteus mirabilis (strain HI4320)
Q8X5K8 4.61e-65 228 29 11 497 2 lpfC' Probable outer membrane usher protein LpfC' Escherichia coli O157:H7
P33410 1.34e-62 230 23 23 801 3 fimC Outer membrane usher protein FimC Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
P21647 1.98e-62 229 26 17 680 3 mrkC Outer membrane usher protein MrkC Klebsiella pneumoniae
P76655 2.68e-62 228 26 22 757 5 yqiG Putative outer membrane usher protein YqiG Escherichia coli (strain K12)
P53512 3.12e-60 223 27 19 760 3 cssD Outer membrane usher protein CssD Escherichia coli
P53513 3.64e-59 219 26 19 764 3 cssD Outer membrane usher protein CssD Escherichia coli
P07110 3.42e-58 217 27 27 784 1 papC Outer membrane usher protein PapC Escherichia coli
Q8X5K7 2.77e-56 201 32 9 359 2 lpfC Probable outer membrane usher protein LpfC Escherichia coli O157:H7
P77196 6.48e-56 211 25 23 871 5 yfcU Putative outer membrane usher protein YfcU Escherichia coli (strain K12)
P75750 7.24e-50 192 25 23 795 3 ybgQ Uncharacterized outer membrane usher protein YbgQ Escherichia coli (strain K12)
P12050 3.31e-48 187 26 26 798 3 fanD Outer membrane usher protein FanD Escherichia coli
P06970 2.86e-47 184 25 29 845 3 faeD Outer membrane usher protein FaeD Escherichia coli
P37868 3.01e-43 172 23 26 792 3 pefC Outer membrane usher protein PefC Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
Q7DBJ9 1.2e-22 104 30 5 226 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli O157:H7
P45420 4.14e-22 105 22 30 789 3 yhcD Uncharacterized outer membrane usher protein YhcD Escherichia coli (strain K12)
P76137 1.96e-21 100 30 5 212 4 ydeT Fimbrial usher domain-containing protein YdeT Escherichia coli (strain K12)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_14845
Feature type CDS
Gene fimD
Product Outer membrane usher protein FimD/PapC
Location 58537 - 61047 (strand: -1)
Length 2511 (nucleotides) / 836 (amino acids)

Contig

Accession ZDB_225
Length 129223 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_2836
Orthogroup size 6
N. genomes 6

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Genomic region

Domains

PF00577 Outer membrane usher protein
PF13953 PapC C-terminal domain
PF13954 PapC N-terminal domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG3188 Cell motility (N)
Extracellular structures (W)		 NW Outer membrane usher protein FimD/PapC

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K07347 outer membrane usher protein Two-component system
Pertussis		 -

Protein Sequence

MMMKKYHNKNHFMSLSVMSVLMAGTSFSVMADDYYPASLFNIPGSNSQLTNEDVNVFKENDNAPGKYKVTLVINNNKITTKEIDFVLKKNKAGNEKLIPCFSREEWENTGLDFPSSDNDDTGGCFNINDIEYTHGYLDLNTRIYALTTPQSYINKDKLEALEQENWDNGIPALFVNYLFSAVNRQHSGETKDSYYGNIQTRVNLGAWRYQNYSTWMNDDNNRNKWKNISNTLSRNINSLKSEFTVGNLYSSSQLFDSVKFRGIRLTTDRSMDPVSKTNYVPSISGMANSEAVVTVVQNGEIILRQSVPAGPFNLTEYYPMSNGGNLYVNVKETDGSEKNFIVPFSSISTLEKKGNMRYSISGGTYDSNNKGNGKKINQAEIFYGLTDFVTVFGGAFVAKDYQSGGIGAAFNFGAFGAITADILHAKATLNHDKASAGNAFRVNYSKRIEATNTSVSLVGYRHFDAKFYRFEDAMSYDENRNDHNKLKNEYTLSLNQPVFSGNSSLNLSTVIYEYTSGKRQKSYNAGFNSSFNKMNYGIYYNYYQGTRTENGKNNTYNVSMNLNIPLNIKDNTIWANYNISSDADHQILQTAGLSGNYGDNQQGSWDIYQSQGNKGTGNSGGLSSSYRSQYASVNAGYSYSKNNKNLSYGMNGSLLATQYGVVAAPALQNTNALVLTKDTAGVGIINGQSAQTNNSGLAVVSGMTPYRKNNIVIDTQTIPGDTEIENNIINDIVPTKGALILADFNVKKGYKLLITLKTPDNKEIPLGAKATMGGDTEYLVSNFNTLYFIADKEKGDIRVTWKQDGNMQQCIIRYDITGTLPTNGIYITKLNCQREI

Flanking regions ( +/- flanking 50bp)

ATTACGGTAAAGCCGTTGAATTAAGTTATTCTGCTAAATAACAGATGATAATGATGATGAAAAAATATCATAATAAAAACCATTTTATGTCATTATCCGTGATGTCTGTCCTTATGGCAGGGACATCTTTCTCCGTTATGGCCGATGATTATTATCCGGCCAGTTTATTTAACATTCCCGGCAGTAACTCACAACTGACTAATGAAGATGTCAATGTTTTCAAAGAAAATGATAATGCGCCCGGAAAATACAAAGTAACTCTTGTTATTAACAATAATAAAATTACCACAAAAGAGATTGATTTTGTTTTGAAAAAAAACAAAGCTGGTAATGAAAAGCTCATTCCCTGTTTTTCAAGAGAAGAATGGGAAAACACAGGACTCGATTTTCCGTCATCAGATAATGATGATACCGGTGGCTGTTTTAATATCAATGACATTGAATATACGCATGGCTATCTCGACCTTAACACCCGGATTTATGCACTGACAACACCACAGTCATACATTAATAAAGATAAACTGGAAGCATTAGAGCAGGAAAACTGGGATAATGGTATTCCTGCGCTCTTTGTTAACTACTTATTTTCGGCTGTAAATCGTCAGCATAGTGGCGAAACAAAAGACAGCTATTATGGAAATATCCAGACCAGAGTTAATCTGGGCGCATGGCGTTATCAGAATTACTCCACCTGGATGAATGATGATAATAATAGAAACAAATGGAAAAATATCAGTAATACCTTATCGAGAAACATAAATTCACTGAAAAGTGAGTTTACTGTCGGTAATCTGTATTCATCATCACAGTTATTTGATTCTGTTAAATTTCGTGGTATTCGTCTGACAACAGACAGATCCATGGATCCGGTCAGTAAAACAAACTATGTTCCGTCAATTTCCGGCATGGCAAATTCAGAGGCCGTTGTCACTGTTGTTCAGAATGGTGAAATTATCCTGAGACAAAGTGTTCCCGCCGGTCCGTTTAATCTGACCGAATATTATCCGATGAGTAATGGCGGAAACCTGTATGTTAATGTTAAGGAAACTGACGGCAGTGAGAAAAATTTCATCGTTCCTTTCTCTTCAATTTCCACACTGGAAAAGAAAGGAAATATGCGTTACAGCATTTCCGGCGGAACCTATGACAGCAATAACAAAGGTAACGGGAAGAAAATCAATCAGGCAGAAATATTTTATGGTCTGACCGATTTTGTCACCGTTTTCGGCGGAGCATTTGTTGCCAAAGATTATCAGTCCGGCGGTATCGGTGCTGCATTCAACTTTGGTGCTTTTGGTGCAATCACAGCCGATATCCTGCATGCAAAAGCAACTCTTAATCACGATAAAGCCTCTGCCGGGAATGCGTTTCGCGTTAACTACTCGAAGAGAATAGAAGCAACAAATACCAGCGTATCCCTGGTGGGTTACCGTCACTTTGATGCTAAATTTTATCGTTTCGAGGATGCAATGTCATATGATGAAAACCGGAACGACCATAATAAACTTAAAAATGAATACACTTTATCACTGAATCAGCCTGTTTTTTCCGGCAATTCATCGCTTAATCTATCGACTGTTATTTATGAATATACATCCGGTAAAAGACAAAAATCCTATAATGCCGGGTTCAACAGCTCATTTAACAAAATGAACTACGGTATATATTATAATTATTATCAGGGCACAAGAACTGAGAACGGTAAAAATAATACCTATAATGTCAGTATGAACCTTAATATTCCGCTCAATATTAAGGATAATACCATCTGGGCAAATTATAATATTTCTTCCGATGCCGATCATCAGATATTGCAGACTGCCGGGCTCAGCGGGAATTATGGAGATAACCAACAAGGCAGCTGGGATATTTATCAGAGTCAGGGTAATAAAGGTACCGGGAATTCAGGCGGTCTGAGTAGTTCCTATCGCTCACAATATGCGTCTGTTAATGCCGGTTATTCATACAGTAAAAATAATAAAAATCTCAGTTATGGCATGAATGGTTCATTACTGGCCACACAATATGGCGTAGTTGCCGCTCCCGCATTACAGAATACCAATGCACTGGTACTGACCAAAGATACTGCCGGTGTGGGTATCATTAACGGTCAGTCTGCTCAGACAAATAATTCGGGCCTTGCTGTTGTTTCCGGTATGACGCCATACCGGAAAAATAATATTGTGATTGATACTCAGACCATCCCCGGTGATACCGAGATCGAAAATAATATTATTAACGATATTGTTCCGACAAAAGGCGCGCTGATTCTGGCCGATTTCAATGTGAAGAAAGGCTACAAACTGCTGATCACACTGAAAACACCTGATAATAAAGAAATACCGTTAGGCGCAAAAGCAACGATGGGTGGTGATACTGAATACCTGGTATCTAATTTTAATACGCTCTATTTCATTGCGGATAAAGAAAAAGGTGATATCCGCGTGACCTGGAAGCAGGACGGAAATATGCAGCAATGCATTATCCGGTATGACATTACCGGCACTTTACCCACGAACGGAATATATATTACAAAGCTGAATTGTCAGCGGGAGATTTGATGAAATACTGTCACCTGATAAAAAAAACCAGACATCTGATATTATCTCTG