Homologs in group_1278

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6 homologs were identified in 6 genomes with OrthoFinder.
The following table displays the locus tag of each homolog, the organism to which it belongs, the gene name and product.

Locus tag Identity Source Gene Product
FBDBKF_07720 FBDBKF_07720 100.0 Morganella morganii S1 mscS Small-conductance mechanosensitive channel
NLDBIP_13995 NLDBIP_13995 100.0 Morganella morganii S4 mscS Small-conductance mechanosensitive channel
LHKJJB_08855 LHKJJB_08855 100.0 Morganella morganii S3 mscS Small-conductance mechanosensitive channel
HKOGLL_08405 HKOGLL_08405 100.0 Morganella morganii S5 mscS Small-conductance mechanosensitive channel
F4V73_RS13365 F4V73_RS13365 85.5 Morganella psychrotolerans - mechanosensitive ion channel
PMI_RS07660 PMI_RS07660 73.0 Proteus mirabilis HI4320 - mechanosensitive ion channel

Distribution of the homologs in the orthogroup group_1278

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Number of homologs in each genome (first column) and amino-acid identity of the closest homolog (second column).

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Phylogeny of the RefSeq best hits of group_1278

Swissprot accession Eval Score ID (%) N gaps Alignment length Annot score Gene Description Organism
P0AAT5 3.78e-65 216 39 2 279 3 ybdG Miniconductance mechanosensitive channel YbdG Shigella flexneri
P0AAT4 3.78e-65 216 39 2 279 1 ybdG Miniconductance mechanosensitive channel YbdG Escherichia coli (strain K12)
Q9ZKG7 7.49e-06 51 18 8 253 3 jhp_0969 Uncharacterized MscS family protein jhp_0969 Helicobacter pylori (strain J99 / ATCC 700824)
O25170 1.3e-05 50 18 8 253 3 HP_0415 Uncharacterized MscS family protein HP_0415 Helicobacter pylori (strain ATCC 700392 / 26695)

  • Number of RefSeq hits:

General

Source Morganella morganii S2
Locus tag EHELCC_13550
Feature type CDS
Gene mscS
Product Small-conductance mechanosensitive channel
Location 36085 - 37296 (strand: 1)
Length 1212 (nucleotides) / 403 (amino acids)

Contig

Accession ZDB_223
Length 138954 nucleotides
Topology linear
Plasmid False

Orthology

Orthogroup group_1278
Orthogroup size 7
N. genomes 7

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Genomic region

Domains

PF00924 Mechanosensitive ion channel, beta-domain

COG entry Annotation(s)

ID Function(s) descr. Function(s) cat. Description
COG0668 Cell wall/membrane/envelope biogenesis (M) M Small-conductance mechanosensitive channel

Kegg Ortholog Annotation(s)

KO Description Pathways Modules
K16053 miniconductance mechanosensitive channel - -

Protein Sequence

MEKLSELYDFITASAVLSAVILVVILLVTWFLGRLIFLRVAKRLLSLFTNLTDDSMIHSIAKKSASVVAVTLVLYINKMLPTFSAEMNILFNTVCSAFLIINLASLVNDGLDIFILRHTGRSSYRNSSIKGYIEIAKIGVWIVSFILIIALMTSQSPLIIISGFGAVAAVLMFVFQHTLLSFVANILVSNGKVLKLYDWIELPGSNISGEVIDIALHTITVRNWDNTISRIPTKDFLTEKYTNWQPMFSSGGRRIKRSFYIDQSSVSFADETLLAELRNQESFRQSLDEILAENTGYDDVKEWMAAKGVTNLQLFRKYLLNWIKMRGDVRADMYLVIRTMSPTPEGLPVEIYCFTRSTTWVDYEETQSQIFEYVNASAKYFRLDIYQQPSGHDLANLRYRAGR

Flanking regions ( +/- flanking 50bp)

ACCTGTGTCAGACTCTATTGCTGATATTTTGATGTATGCTGTGAGATATGATGGAAAAATTATCTGAATTATATGATTTTATTACCGCGAGCGCCGTTTTATCGGCGGTGATTCTGGTGGTTATTCTGCTGGTCACCTGGTTTCTCGGGCGGCTTATATTTCTGCGCGTGGCAAAACGTTTGTTGTCGTTATTTACTAACCTGACTGACGACAGCATGATCCACAGTATTGCCAAGAAAAGTGCCTCTGTCGTGGCTGTCACGCTGGTGCTGTATATTAATAAGATGCTGCCGACCTTTTCGGCAGAAATGAATATTCTGTTTAATACTGTATGCAGCGCATTCCTGATTATTAATCTGGCTTCACTGGTTAATGACGGGCTGGATATATTTATCCTGCGCCATACCGGGCGTTCATCGTACCGTAACAGCTCGATAAAGGGGTATATTGAAATTGCCAAAATCGGGGTGTGGATTGTTTCCTTTATCCTGATTATTGCGTTAATGACCTCGCAGTCGCCGCTGATTATTATTTCCGGTTTCGGTGCCGTTGCAGCTGTTCTGATGTTTGTCTTTCAGCACACCTTATTATCCTTTGTGGCCAATATTCTGGTCTCCAACGGTAAGGTGCTGAAACTGTATGACTGGATAGAATTGCCCGGCAGTAATATCAGCGGTGAAGTGATTGATATTGCGCTGCATACCATTACTGTCCGCAACTGGGATAATACGATCTCAAGGATCCCGACAAAAGATTTCCTGACCGAAAAATACACTAACTGGCAGCCGATGTTCTCTTCCGGCGGCCGCCGTATTAAACGCAGTTTTTATATTGATCAGTCCTCAGTATCGTTTGCTGATGAAACGTTATTAGCGGAGCTGCGGAATCAGGAATCGTTTCGTCAGTCACTGGATGAAATACTGGCGGAAAATACCGGTTATGATGACGTAAAAGAGTGGATGGCTGCAAAAGGGGTCACTAATTTACAGCTGTTCCGCAAATATCTTCTTAACTGGATCAAAATGCGCGGTGATGTGCGGGCGGATATGTATCTGGTGATCAGAACCATGTCGCCGACACCGGAGGGATTGCCGGTTGAAATATACTGTTTTACCCGCTCCACCACCTGGGTTGATTATGAGGAAACTCAGTCGCAGATATTTGAATATGTGAATGCGTCGGCAAAATATTTCCGGCTGGATATTTACCAGCAACCGTCCGGCCATGATCTGGCGAATCTGCGTTACAGAGCAGGACGGTGATGCGTCCCGCCCGCTGATAACGGGCAAAAACGAAAAGTCGCTGTAAATAC